Hb_055529_010

Information

Type transcription factor
Description TF Family: ERF
Location Contig55529: 8590-9267
Sequence    

Annotation

kegg
ID rcu:RCOM_0463380
description Ethylene-responsive transcription factor 1B, putative
nr
ID XP_002532362.1
description Ethylene-responsive transcription factor 1B, putative [Ricinus communis]
swissprot
ID Q8LDC8
description Ethylene-responsive transcription factor 1B OS=Arabidopsis thaliana GN=ERF1B PE=1 SV=2
trembl
ID B9T293
description Ethylene-responsive transcription factor 1B, putative (Fragment) OS=Ricinus communis GN=RCOM_0463380 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ethylene-responsive transcription factor 1b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_055529_010 0.0 transcription factor TF Family: ERF Ethylene-responsive transcription factor 1B, putative [Ricinus communis]
2 Hb_000994_100 0.0881307844 - - RALFL33, putative [Ricinus communis]
3 Hb_002970_070 0.0919505114 - - multidrug/pheromone exporter protein [Hevea brasiliensis]
4 Hb_002042_160 0.1049028171 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
5 Hb_172633_020 0.1312170573 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56140 [Populus euphratica]
6 Hb_002490_090 0.1352245428 - - PREDICTED: uncharacterized protein LOC105133003 [Populus euphratica]
7 Hb_000172_740 0.1375167094 - - HXXXD-type acyl-transferase family protein, putative [Theobroma cacao]
8 Hb_184942_010 0.1417256778 - - STS14 protein precursor, putative [Ricinus communis]
9 Hb_000036_060 0.1425965429 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
10 Hb_150084_010 0.1451466494 - - PREDICTED: premnaspirodiene oxygenase-like [Vitis vinifera]
11 Hb_000115_290 0.1531885386 - - PREDICTED: uncharacterized protein LOC105124123 [Populus euphratica]
12 Hb_007943_020 0.1551511054 - - transcription factor, putative [Ricinus communis]
13 Hb_094637_010 0.1561535918 - - PREDICTED: uncharacterized protein LOC105642042 [Jatropha curcas]
14 Hb_000844_100 0.156566181 - - hypothetical protein JCGZ_04351 [Jatropha curcas]
15 Hb_010417_090 0.1608158497 - - PREDICTED: protein LURP-one-related 17 [Jatropha curcas]
16 Hb_130967_010 0.1608620087 - - UDP-glucosyltransferase, putative [Ricinus communis]
17 Hb_000347_420 0.1627545581 - - hypothetical protein JCGZ_24696 [Jatropha curcas]
18 Hb_000286_030 0.1652587487 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
19 Hb_001863_080 0.1654940834 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Jatropha curcas]
20 Hb_000963_010 0.1657109084 - - PREDICTED: aquaporin PIP2-4 [Jatropha curcas]

Gene co-expression network

sample Hb_055529_010 Hb_055529_010 Hb_000994_100 Hb_000994_100 Hb_055529_010--Hb_000994_100 Hb_002970_070 Hb_002970_070 Hb_055529_010--Hb_002970_070 Hb_002042_160 Hb_002042_160 Hb_055529_010--Hb_002042_160 Hb_172633_020 Hb_172633_020 Hb_055529_010--Hb_172633_020 Hb_002490_090 Hb_002490_090 Hb_055529_010--Hb_002490_090 Hb_000172_740 Hb_000172_740 Hb_055529_010--Hb_000172_740 Hb_000994_100--Hb_002970_070 Hb_000994_100--Hb_002042_160 Hb_029260_010 Hb_029260_010 Hb_000994_100--Hb_029260_010 Hb_000347_420 Hb_000347_420 Hb_000994_100--Hb_000347_420 Hb_010417_090 Hb_010417_090 Hb_000994_100--Hb_010417_090 Hb_002970_070--Hb_002042_160 Hb_002970_070--Hb_010417_090 Hb_130967_010 Hb_130967_010 Hb_002970_070--Hb_130967_010 Hb_000020_030 Hb_000020_030 Hb_002970_070--Hb_000020_030 Hb_002042_160--Hb_172633_020 Hb_184942_010 Hb_184942_010 Hb_002042_160--Hb_184942_010 Hb_150084_010 Hb_150084_010 Hb_002042_160--Hb_150084_010 Hb_172633_020--Hb_002490_090 Hb_172633_020--Hb_184942_010 Hb_172633_020--Hb_150084_010 Hb_006120_030 Hb_006120_030 Hb_172633_020--Hb_006120_030 Hb_000963_010 Hb_000963_010 Hb_172633_020--Hb_000963_010 Hb_002490_090--Hb_006120_030 Hb_002490_090--Hb_184942_010 Hb_000917_120 Hb_000917_120 Hb_002490_090--Hb_000917_120 Hb_007123_020 Hb_007123_020 Hb_002490_090--Hb_007123_020 Hb_002490_090--Hb_150084_010 Hb_001863_080 Hb_001863_080 Hb_000172_740--Hb_001863_080 Hb_000172_740--Hb_150084_010 Hb_000286_030 Hb_000286_030 Hb_000172_740--Hb_000286_030 Hb_188923_010 Hb_188923_010 Hb_000172_740--Hb_188923_010 Hb_003805_080 Hb_003805_080 Hb_000172_740--Hb_003805_080 Hb_000230_160 Hb_000230_160 Hb_000172_740--Hb_000230_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.675274 0.0277149 0.909352 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.05688 0.393018

CAGE analysis