Hb_002042_160

Information

Type -
Description -
Location Contig2042: 122705-125193
Sequence    

Annotation

kegg
ID rcu:RCOM_1430890
description chloroplast-targeted copper chaperone, putative
nr
ID XP_002512349.1
description chloroplast-targeted copper chaperone, putative [Ricinus communis]
swissprot
ID Q9SZN7
description Heavy metal-associated isoprenylated plant protein 26 OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1
trembl
ID B9RF30
description Chloroplast-targeted copper chaperone, putative OS=Ricinus communis GN=RCOM_1430890 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20952: 122673-125160 , PASA_asmbl_20953: 125290-125529
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002042_160 0.0 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
2 Hb_000994_100 0.0773426228 - - RALFL33, putative [Ricinus communis]
3 Hb_002970_070 0.0849972761 - - multidrug/pheromone exporter protein [Hevea brasiliensis]
4 Hb_172633_020 0.1018941114 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56140 [Populus euphratica]
5 Hb_184942_010 0.1035710857 - - STS14 protein precursor, putative [Ricinus communis]
6 Hb_055529_010 0.1049028171 transcription factor TF Family: ERF Ethylene-responsive transcription factor 1B, putative [Ricinus communis]
7 Hb_150084_010 0.1074819699 - - PREDICTED: premnaspirodiene oxygenase-like [Vitis vinifera]
8 Hb_007943_020 0.1107581146 - - transcription factor, putative [Ricinus communis]
9 Hb_000963_010 0.1147871135 - - PREDICTED: aquaporin PIP2-4 [Jatropha curcas]
10 Hb_000020_030 0.115474565 - - protein binding protein, putative [Ricinus communis]
11 Hb_002490_090 0.1237544114 - - PREDICTED: uncharacterized protein LOC105133003 [Populus euphratica]
12 Hb_012787_050 0.1253871084 - - PREDICTED: glutathione S-transferase U18-like [Jatropha curcas]
13 Hb_032260_130 0.1266305152 - - hypothetical protein POPTR_0003s13800g [Populus trichocarpa]
14 Hb_029260_010 0.1267254929 - - nitrate transporter, putative [Ricinus communis]
15 Hb_002333_010 0.1285302986 - - hypothetical protein JCGZ_18834 [Jatropha curcas]
16 Hb_006846_030 0.1289190718 - - respiratory burst oxidase A [Manihot esculenta]
17 Hb_116194_010 0.129463647 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
18 Hb_000347_420 0.1297323876 - - hypothetical protein JCGZ_24696 [Jatropha curcas]
19 Hb_000115_290 0.1311942385 - - PREDICTED: uncharacterized protein LOC105124123 [Populus euphratica]
20 Hb_078361_010 0.1336326509 - - PREDICTED: AT-hook motif nuclear-localized protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_002042_160 Hb_002042_160 Hb_000994_100 Hb_000994_100 Hb_002042_160--Hb_000994_100 Hb_002970_070 Hb_002970_070 Hb_002042_160--Hb_002970_070 Hb_172633_020 Hb_172633_020 Hb_002042_160--Hb_172633_020 Hb_184942_010 Hb_184942_010 Hb_002042_160--Hb_184942_010 Hb_055529_010 Hb_055529_010 Hb_002042_160--Hb_055529_010 Hb_150084_010 Hb_150084_010 Hb_002042_160--Hb_150084_010 Hb_000994_100--Hb_002970_070 Hb_000994_100--Hb_055529_010 Hb_029260_010 Hb_029260_010 Hb_000994_100--Hb_029260_010 Hb_000347_420 Hb_000347_420 Hb_000994_100--Hb_000347_420 Hb_010417_090 Hb_010417_090 Hb_000994_100--Hb_010417_090 Hb_002970_070--Hb_055529_010 Hb_002970_070--Hb_010417_090 Hb_130967_010 Hb_130967_010 Hb_002970_070--Hb_130967_010 Hb_000020_030 Hb_000020_030 Hb_002970_070--Hb_000020_030 Hb_002490_090 Hb_002490_090 Hb_172633_020--Hb_002490_090 Hb_172633_020--Hb_184942_010 Hb_172633_020--Hb_150084_010 Hb_006120_030 Hb_006120_030 Hb_172633_020--Hb_006120_030 Hb_000963_010 Hb_000963_010 Hb_172633_020--Hb_000963_010 Hb_184942_010--Hb_000963_010 Hb_184942_010--Hb_150084_010 Hb_001158_080 Hb_001158_080 Hb_184942_010--Hb_001158_080 Hb_184942_010--Hb_002490_090 Hb_055529_010--Hb_172633_020 Hb_055529_010--Hb_002490_090 Hb_000172_740 Hb_000172_740 Hb_055529_010--Hb_000172_740 Hb_002333_010 Hb_002333_010 Hb_150084_010--Hb_002333_010 Hb_150084_010--Hb_000963_010 Hb_150084_010--Hb_000172_740
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.194929 18.1663 3.73543 32.5718 0.0609575 0.0737779
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.148057 0.0776611 0 35.1117 13.8344

CAGE analysis