Hb_029260_010

Information

Type -
Description -
Location Contig29260: 15793-26584
Sequence    

Annotation

kegg
ID rcu:RCOM_0023970
description nitrate transporter, putative
nr
ID XP_002527899.1
description nitrate transporter, putative [Ricinus communis]
swissprot
ID Q9LPV5
description High affinity nitrate transporter 2.5 OS=Arabidopsis thaliana GN=NRT2.5 PE=2 SV=1
trembl
ID B9SPI0
description Nitrate transporter, putative OS=Ricinus communis GN=RCOM_0023970 PE=4 SV=1
Gene Ontology
ID GO:0005886
description high affinity nitrate transporter

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029260_010 0.0 - - nitrate transporter, putative [Ricinus communis]
2 Hb_138606_020 0.043313735 - - Nitrate transporter2.5 [Theobroma cacao]
3 Hb_005357_020 0.0890050376 - - conserved hypothetical protein [Ricinus communis]
4 Hb_012743_020 0.0927276807 - - serine/threonine protein phosphatase, putative [Ricinus communis]
5 Hb_000347_420 0.0936059699 - - hypothetical protein JCGZ_24696 [Jatropha curcas]
6 Hb_000840_050 0.0957687969 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Vitis vinifera]
7 Hb_007943_020 0.0996870198 - - transcription factor, putative [Ricinus communis]
8 Hb_000994_100 0.1065448328 - - RALFL33, putative [Ricinus communis]
9 Hb_000028_460 0.1076508561 - - hypothetical protein POPTR_0015s05340g [Populus trichocarpa]
10 Hb_000497_100 0.11438518 - - respiratory burst oxidase D [Manihot esculenta]
11 Hb_000589_240 0.1185759623 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
12 Hb_003226_030 0.119304065 - - sucrose synthase 5 [Hevea brasiliensis]
13 Hb_001143_140 0.1209476551 - - Aldehyde dehydrogenase, putative [Ricinus communis]
14 Hb_130967_010 0.122740048 - - UDP-glucosyltransferase, putative [Ricinus communis]
15 Hb_038777_010 0.1252188463 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN2 isoform X1 [Populus euphratica]
16 Hb_009659_040 0.1253558071 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER [Populus euphratica]
17 Hb_010417_100 0.1265091382 - - PREDICTED: respiratory burst oxidase homolog protein A [Jatropha curcas]
18 Hb_002042_160 0.1267254929 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
19 Hb_004307_070 0.1290345416 - - kinase, putative [Ricinus communis]
20 Hb_003847_050 0.1295403611 - - PREDICTED: aquaporin SIP1-1 [Jatropha curcas]

Gene co-expression network

sample Hb_029260_010 Hb_029260_010 Hb_138606_020 Hb_138606_020 Hb_029260_010--Hb_138606_020 Hb_005357_020 Hb_005357_020 Hb_029260_010--Hb_005357_020 Hb_012743_020 Hb_012743_020 Hb_029260_010--Hb_012743_020 Hb_000347_420 Hb_000347_420 Hb_029260_010--Hb_000347_420 Hb_000840_050 Hb_000840_050 Hb_029260_010--Hb_000840_050 Hb_007943_020 Hb_007943_020 Hb_029260_010--Hb_007943_020 Hb_138606_020--Hb_000840_050 Hb_009659_040 Hb_009659_040 Hb_138606_020--Hb_009659_040 Hb_138606_020--Hb_005357_020 Hb_138606_020--Hb_000347_420 Hb_138606_020--Hb_012743_020 Hb_005357_020--Hb_012743_020 Hb_010417_100 Hb_010417_100 Hb_005357_020--Hb_010417_100 Hb_038777_010 Hb_038777_010 Hb_005357_020--Hb_038777_010 Hb_000589_240 Hb_000589_240 Hb_005357_020--Hb_000589_240 Hb_003226_030 Hb_003226_030 Hb_012743_020--Hb_003226_030 Hb_012743_020--Hb_000589_240 Hb_001143_140 Hb_001143_140 Hb_012743_020--Hb_001143_140 Hb_002000_130 Hb_002000_130 Hb_012743_020--Hb_002000_130 Hb_000347_420--Hb_007943_020 Hb_004307_070 Hb_004307_070 Hb_000347_420--Hb_004307_070 Hb_000095_070 Hb_000095_070 Hb_000347_420--Hb_000095_070 Hb_000994_100 Hb_000994_100 Hb_000347_420--Hb_000994_100 Hb_175758_010 Hb_175758_010 Hb_000840_050--Hb_175758_010 Hb_000203_080 Hb_000203_080 Hb_000840_050--Hb_000203_080 Hb_001329_110 Hb_001329_110 Hb_000840_050--Hb_001329_110 Hb_000840_050--Hb_009659_040 Hb_000840_050--Hb_010417_100 Hb_007943_020--Hb_003226_030 Hb_000020_030 Hb_000020_030 Hb_007943_020--Hb_000020_030 Hb_002042_160 Hb_002042_160 Hb_007943_020--Hb_002042_160 Hb_007943_020--Hb_138606_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.52852 0.576437 1.7068 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.01712 1.02862

CAGE analysis