Hb_000095_070

Information

Type -
Description -
Location Contig95: 156145-157770
Sequence    

Annotation

kegg
ID rcu:RCOM_1756120
description hypothetical protein
nr
ID XP_002513735.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q0V865
description Protein FAF-like, chloroplastic OS=Arabidopsis thaliana GN=At5g22090 PE=2 SV=1
trembl
ID B9RJ16
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1756120 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63388: 155879-157850
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000095_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002814_050 0.0978976318 - - PREDICTED: sugar carrier protein A [Jatropha curcas]
3 Hb_060198_010 0.1029495173 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
4 Hb_000347_420 0.107990956 - - hypothetical protein JCGZ_24696 [Jatropha curcas]
5 Hb_001728_130 0.1119694065 - - alcohol dehydrogenase, putative [Ricinus communis]
6 Hb_000959_120 0.1122690625 - - PREDICTED: protein BRASSINOSTEROID INSENSITIVE 1 [Jatropha curcas]
7 Hb_004307_070 0.1136218128 - - kinase, putative [Ricinus communis]
8 Hb_003226_030 0.1192552491 - - sucrose synthase 5 [Hevea brasiliensis]
9 Hb_001143_140 0.1202165024 - - Aldehyde dehydrogenase, putative [Ricinus communis]
10 Hb_012743_020 0.1236407732 - - serine/threonine protein phosphatase, putative [Ricinus communis]
11 Hb_000483_130 0.1247252903 - - PREDICTED: uncharacterized protein LOC105644062 isoform X1 [Jatropha curcas]
12 Hb_007943_020 0.1278199839 - - transcription factor, putative [Ricinus communis]
13 Hb_078361_010 0.1279770471 - - PREDICTED: AT-hook motif nuclear-localized protein 1 [Jatropha curcas]
14 Hb_004462_030 0.1304334123 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
15 Hb_032260_130 0.1314180685 - - hypothetical protein POPTR_0003s13800g [Populus trichocarpa]
16 Hb_164117_010 0.1366744487 - - hypothetical protein PHAVU_004G0480000g [Phaseolus vulgaris]
17 Hb_002010_070 0.1385051606 - - hypothetical protein EUGRSUZ_I027342, partial [Eucalyptus grandis]
18 Hb_002671_060 0.1397907139 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 [Jatropha curcas]
19 Hb_009641_040 0.1401902266 - - PREDICTED: uncharacterized protein LOC105633355 [Jatropha curcas]
20 Hb_019026_050 0.1402265213 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000095_070 Hb_000095_070 Hb_002814_050 Hb_002814_050 Hb_000095_070--Hb_002814_050 Hb_060198_010 Hb_060198_010 Hb_000095_070--Hb_060198_010 Hb_000347_420 Hb_000347_420 Hb_000095_070--Hb_000347_420 Hb_001728_130 Hb_001728_130 Hb_000095_070--Hb_001728_130 Hb_000959_120 Hb_000959_120 Hb_000095_070--Hb_000959_120 Hb_004307_070 Hb_004307_070 Hb_000095_070--Hb_004307_070 Hb_002814_050--Hb_000347_420 Hb_002814_050--Hb_004307_070 Hb_007943_020 Hb_007943_020 Hb_002814_050--Hb_007943_020 Hb_116194_010 Hb_116194_010 Hb_002814_050--Hb_116194_010 Hb_000970_020 Hb_000970_020 Hb_002814_050--Hb_000970_020 Hb_002010_070 Hb_002010_070 Hb_060198_010--Hb_002010_070 Hb_143629_200 Hb_143629_200 Hb_060198_010--Hb_143629_200 Hb_001143_140 Hb_001143_140 Hb_060198_010--Hb_001143_140 Hb_000465_450 Hb_000465_450 Hb_060198_010--Hb_000465_450 Hb_001706_020 Hb_001706_020 Hb_060198_010--Hb_001706_020 Hb_000347_420--Hb_007943_020 Hb_029260_010 Hb_029260_010 Hb_000347_420--Hb_029260_010 Hb_000347_420--Hb_004307_070 Hb_138606_020 Hb_138606_020 Hb_000347_420--Hb_138606_020 Hb_000994_100 Hb_000994_100 Hb_000347_420--Hb_000994_100 Hb_014361_040 Hb_014361_040 Hb_001728_130--Hb_014361_040 Hb_135720_010 Hb_135720_010 Hb_001728_130--Hb_135720_010 Hb_005545_110 Hb_005545_110 Hb_001728_130--Hb_005545_110 Hb_164117_010 Hb_164117_010 Hb_001728_130--Hb_164117_010 Hb_073808_010 Hb_073808_010 Hb_001728_130--Hb_073808_010 Hb_001247_270 Hb_001247_270 Hb_000959_120--Hb_001247_270 Hb_000979_160 Hb_000979_160 Hb_000959_120--Hb_000979_160 Hb_000959_120--Hb_001728_130 Hb_001976_020 Hb_001976_020 Hb_000959_120--Hb_001976_020 Hb_004462_030 Hb_004462_030 Hb_000959_120--Hb_004462_030 Hb_004307_070--Hb_001143_140 Hb_006355_070 Hb_006355_070 Hb_004307_070--Hb_006355_070 Hb_009641_040 Hb_009641_040 Hb_004307_070--Hb_009641_040 Hb_004307_070--Hb_000994_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.862283 24.1172 8.78048 43.4185 0.3585 0.503147
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0854259 0 1.18202 30.8191 28.7759

CAGE analysis