Hb_005545_110

Information

Type -
Description -
Location Contig5545: 138778-141756
Sequence    

Annotation

kegg
ID rcu:RCOM_0687400
description hypothetical protein
nr
ID XP_012086714.1
description PREDICTED: protein trichome birefringence-like 33 [Jatropha curcas]
swissprot
ID F4IH21
description Protein trichome birefringence-like 33 OS=Arabidopsis thaliana GN=TBL33 PE=2 SV=1
trembl
ID A0A067LJA3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01200 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005545_110 0.0 - - PREDICTED: protein trichome birefringence-like 33 [Jatropha curcas]
2 Hb_152980_020 0.0844307111 - - PREDICTED: protein trichome birefringence-like 33 [Jatropha curcas]
3 Hb_003633_170 0.1073283393 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002750_040 0.1176111643 - - PREDICTED: probable inactive receptor kinase At5g67200 [Jatropha curcas]
5 Hb_031224_010 0.1178077082 - - -
6 Hb_001404_070 0.1185480796 - - sucrose synthase 4 [Hevea brasiliensis]
7 Hb_001728_130 0.120075154 - - alcohol dehydrogenase, putative [Ricinus communis]
8 Hb_009641_040 0.1203843731 - - PREDICTED: uncharacterized protein LOC105633355 [Jatropha curcas]
9 Hb_164117_010 0.1227069533 - - hypothetical protein PHAVU_004G0480000g [Phaseolus vulgaris]
10 Hb_000462_190 0.123795536 - - PREDICTED: thaumatin-like protein 1 [Jatropha curcas]
11 Hb_003894_180 0.1262138495 - - PREDICTED: uncharacterized protein LOC104245193, partial [Nicotiana sylvestris]
12 Hb_014361_040 0.127657942 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
13 Hb_026198_020 0.1291551781 - - PREDICTED: uncharacterized protein LOC105634368 [Jatropha curcas]
14 Hb_000329_010 0.1304348727 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
15 Hb_004667_030 0.1314559125 - - hypothetical protein VITISV_034568 [Vitis vinifera]
16 Hb_004893_010 0.1331159609 - - PREDICTED: O-acyltransferase WSD1-like [Jatropha curcas]
17 Hb_007370_010 0.133195826 - - PREDICTED: indole-3-pyruvate monooxygenase YUCCA6 [Jatropha curcas]
18 Hb_144449_010 0.1333352191 - - Potassium transporter, putative [Ricinus communis]
19 Hb_000152_570 0.1345526592 - - 21 kDa protein precursor, putative [Ricinus communis]
20 Hb_002809_080 0.1348675244 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005545_110 Hb_005545_110 Hb_152980_020 Hb_152980_020 Hb_005545_110--Hb_152980_020 Hb_003633_170 Hb_003633_170 Hb_005545_110--Hb_003633_170 Hb_002750_040 Hb_002750_040 Hb_005545_110--Hb_002750_040 Hb_031224_010 Hb_031224_010 Hb_005545_110--Hb_031224_010 Hb_001404_070 Hb_001404_070 Hb_005545_110--Hb_001404_070 Hb_001728_130 Hb_001728_130 Hb_005545_110--Hb_001728_130 Hb_144449_010 Hb_144449_010 Hb_152980_020--Hb_144449_010 Hb_002685_160 Hb_002685_160 Hb_152980_020--Hb_002685_160 Hb_001269_400 Hb_001269_400 Hb_152980_020--Hb_001269_400 Hb_014361_040 Hb_014361_040 Hb_152980_020--Hb_014361_040 Hb_010222_040 Hb_010222_040 Hb_152980_020--Hb_010222_040 Hb_003633_170--Hb_031224_010 Hb_007370_010 Hb_007370_010 Hb_003633_170--Hb_007370_010 Hb_002566_020 Hb_002566_020 Hb_003633_170--Hb_002566_020 Hb_008304_050 Hb_008304_050 Hb_003633_170--Hb_008304_050 Hb_004893_010 Hb_004893_010 Hb_003633_170--Hb_004893_010 Hb_003894_180 Hb_003894_180 Hb_003633_170--Hb_003894_180 Hb_026198_020 Hb_026198_020 Hb_002750_040--Hb_026198_020 Hb_113766_010 Hb_113766_010 Hb_002750_040--Hb_113766_010 Hb_002750_040--Hb_001404_070 Hb_009122_010 Hb_009122_010 Hb_002750_040--Hb_009122_010 Hb_002391_240 Hb_002391_240 Hb_002750_040--Hb_002391_240 Hb_001269_580 Hb_001269_580 Hb_002750_040--Hb_001269_580 Hb_000329_010 Hb_000329_010 Hb_031224_010--Hb_000329_010 Hb_031224_010--Hb_002566_020 Hb_031224_010--Hb_007370_010 Hb_002370_050 Hb_002370_050 Hb_031224_010--Hb_002370_050 Hb_002809_080 Hb_002809_080 Hb_031224_010--Hb_002809_080 Hb_000959_130 Hb_000959_130 Hb_001404_070--Hb_000959_130 Hb_009456_010 Hb_009456_010 Hb_001404_070--Hb_009456_010 Hb_141194_020 Hb_141194_020 Hb_001404_070--Hb_141194_020 Hb_004667_030 Hb_004667_030 Hb_001404_070--Hb_004667_030 Hb_000095_070 Hb_000095_070 Hb_001728_130--Hb_000095_070 Hb_001728_130--Hb_014361_040 Hb_135720_010 Hb_135720_010 Hb_001728_130--Hb_135720_010 Hb_164117_010 Hb_164117_010 Hb_001728_130--Hb_164117_010 Hb_073808_010 Hb_073808_010 Hb_001728_130--Hb_073808_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.301402 2.54446 3.03482 12.1575 0.0963879 0.105983
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0230481 0.0433923 5.49747 6.91072

CAGE analysis