Hb_004667_030

Information

Type -
Description -
Location Contig4667: 46352-51153
Sequence    

Annotation

kegg
ID vvi:100261035
description uncharacterized LOC100261035
nr
ID CAN59756.1
description hypothetical protein VITISV_034568 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5BQ50
description Putative uncharacterized protein (Fragment) OS=Vitis vinifera GN=VITISV_034568 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44096: 47082-47816 , PASA_asmbl_44097: 47834-48332
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004667_030 0.0 - - hypothetical protein VITISV_034568 [Vitis vinifera]
2 Hb_003633_170 0.0950078467 - - conserved hypothetical protein [Ricinus communis]
3 Hb_033772_060 0.1009888485 - - conserved hypothetical protein [Ricinus communis]
4 Hb_031224_010 0.1029203042 - - -
5 Hb_065521_010 0.1105712313 - - PREDICTED: probable metal-nicotianamine transporter YSL5 [Jatropha curcas]
6 Hb_002566_020 0.1140844837 - - hypothetical protein JCGZ_15085 [Jatropha curcas]
7 Hb_001677_090 0.1153700281 - - PREDICTED: CASP-like protein 5B2 [Jatropha curcas]
8 Hb_007017_100 0.1158898691 - - PREDICTED: uncharacterized protein LOC105649804 isoform X1 [Jatropha curcas]
9 Hb_007875_020 0.1161251512 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
10 Hb_009456_010 0.1163556184 - - PREDICTED: cinnamoyl-CoA reductase 1-like isoform X3 [Populus euphratica]
11 Hb_003894_180 0.1171529427 - - PREDICTED: uncharacterized protein LOC104245193, partial [Nicotiana sylvestris]
12 Hb_007370_010 0.1184508527 - - PREDICTED: indole-3-pyruvate monooxygenase YUCCA6 [Jatropha curcas]
13 Hb_002783_180 0.1211779542 - - Tubulin beta-6 chain [Gossypium arboreum]
14 Hb_004162_140 0.121659671 - - PREDICTED: serine carboxypeptidase-like 51 [Jatropha curcas]
15 Hb_008566_080 0.1225255822 - - PREDICTED: uncharacterized protein LOC105647834 [Jatropha curcas]
16 Hb_000014_080 0.1261174201 - - PREDICTED: UDP-glycosyltransferase 87A1-like [Jatropha curcas]
17 Hb_001404_070 0.1296922807 - - sucrose synthase 4 [Hevea brasiliensis]
18 Hb_005545_110 0.1314559125 - - PREDICTED: protein trichome birefringence-like 33 [Jatropha curcas]
19 Hb_009641_040 0.1321959968 - - PREDICTED: uncharacterized protein LOC105633355 [Jatropha curcas]
20 Hb_000152_880 0.1331590825 - - -

Gene co-expression network

sample Hb_004667_030 Hb_004667_030 Hb_003633_170 Hb_003633_170 Hb_004667_030--Hb_003633_170 Hb_033772_060 Hb_033772_060 Hb_004667_030--Hb_033772_060 Hb_031224_010 Hb_031224_010 Hb_004667_030--Hb_031224_010 Hb_065521_010 Hb_065521_010 Hb_004667_030--Hb_065521_010 Hb_002566_020 Hb_002566_020 Hb_004667_030--Hb_002566_020 Hb_001677_090 Hb_001677_090 Hb_004667_030--Hb_001677_090 Hb_003633_170--Hb_031224_010 Hb_007370_010 Hb_007370_010 Hb_003633_170--Hb_007370_010 Hb_003633_170--Hb_002566_020 Hb_008304_050 Hb_008304_050 Hb_003633_170--Hb_008304_050 Hb_004893_010 Hb_004893_010 Hb_003633_170--Hb_004893_010 Hb_003894_180 Hb_003894_180 Hb_003633_170--Hb_003894_180 Hb_007894_080 Hb_007894_080 Hb_033772_060--Hb_007894_080 Hb_000152_880 Hb_000152_880 Hb_033772_060--Hb_000152_880 Hb_029639_030 Hb_029639_030 Hb_033772_060--Hb_029639_030 Hb_000181_220 Hb_000181_220 Hb_033772_060--Hb_000181_220 Hb_093218_010 Hb_093218_010 Hb_033772_060--Hb_093218_010 Hb_005892_040 Hb_005892_040 Hb_033772_060--Hb_005892_040 Hb_000329_010 Hb_000329_010 Hb_031224_010--Hb_000329_010 Hb_031224_010--Hb_002566_020 Hb_031224_010--Hb_007370_010 Hb_002370_050 Hb_002370_050 Hb_031224_010--Hb_002370_050 Hb_002809_080 Hb_002809_080 Hb_031224_010--Hb_002809_080 Hb_007875_020 Hb_007875_020 Hb_065521_010--Hb_007875_020 Hb_029510_090 Hb_029510_090 Hb_065521_010--Hb_029510_090 Hb_002448_020 Hb_002448_020 Hb_065521_010--Hb_002448_020 Hb_168319_060 Hb_168319_060 Hb_065521_010--Hb_168319_060 Hb_014967_020 Hb_014967_020 Hb_065521_010--Hb_014967_020 Hb_007386_030 Hb_007386_030 Hb_065521_010--Hb_007386_030 Hb_009456_010 Hb_009456_010 Hb_002566_020--Hb_009456_010 Hb_002783_180 Hb_002783_180 Hb_002566_020--Hb_002783_180 Hb_000389_100 Hb_000389_100 Hb_002566_020--Hb_000389_100 Hb_002566_020--Hb_007370_010 Hb_000120_320 Hb_000120_320 Hb_001677_090--Hb_000120_320 Hb_149055_010 Hb_149055_010 Hb_001677_090--Hb_149055_010 Hb_008175_050 Hb_008175_050 Hb_001677_090--Hb_008175_050 Hb_001138_070 Hb_001138_070 Hb_001677_090--Hb_001138_070 Hb_001677_090--Hb_033772_060 Hb_000011_370 Hb_000011_370 Hb_001677_090--Hb_000011_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.159041 0.395349 1.12375 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0150984 0.0118812 0 0.612749 0.658629

CAGE analysis