Hb_073808_010

Information

Type desease resistance
Description Gene Name: DUF594
Location Contig73808: 97-5708
Sequence    

Annotation

kegg
ID rcu:RCOM_0455900
description ATP binding protein, putative (EC:3.1.3.16)
nr
ID XP_002529498.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID Q39214
description Disease resistance protein RPM1 OS=Arabidopsis thaliana GN=RPM1 PE=1 SV=1
trembl
ID B9SU29
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_0455900 PE=4 SV=1
Gene Ontology
ID GO:0016787
description disease resistance rpp13-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56251: 4444-4698 , PASA_asmbl_56252: 5251-5744
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_073808_010 0.0 desease resistance Gene Name: DUF594 ATP binding protein, putative [Ricinus communis]
2 Hb_001189_100 0.1152865102 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 2-like [Jatropha curcas]
3 Hb_002671_060 0.1198410482 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 [Jatropha curcas]
4 Hb_000085_380 0.1209697153 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001728_130 0.1250317132 - - alcohol dehydrogenase, putative [Ricinus communis]
6 Hb_001247_270 0.1329394677 - - PREDICTED: probable L-cysteine desulfhydrase, chloroplastic [Jatropha curcas]
7 Hb_042202_020 0.1335304998 - - Eukaryotic release factor 1-3 isoform 1 [Theobroma cacao]
8 Hb_002685_160 0.1341593257 - - leucine-rich repeat protein, putative [Ricinus communis]
9 Hb_000483_130 0.136425044 - - PREDICTED: uncharacterized protein LOC105644062 isoform X1 [Jatropha curcas]
10 Hb_000959_120 0.1368462301 - - PREDICTED: protein BRASSINOSTEROID INSENSITIVE 1 [Jatropha curcas]
11 Hb_000003_020 0.1385753479 - - PREDICTED: uncharacterized protein LOC105631161 [Jatropha curcas]
12 Hb_033234_010 0.1390026929 desease resistance Gene Name: LRR_8 Disease resistance protein RPP8 [Theobroma cacao]
13 Hb_000095_070 0.1410204898 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003025_150 0.1426734259 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000398_140 0.1452440193 - - PREDICTED: methionine S-methyltransferase [Jatropha curcas]
16 Hb_002740_100 0.1522158813 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
17 Hb_003142_060 0.1527389281 - - PREDICTED: glutamate synthase 1 [NADH], chloroplastic isoform X1 [Jatropha curcas]
18 Hb_000914_150 0.1540674086 - - ADP,ATP carrier protein, putative [Ricinus communis]
19 Hb_004421_010 0.1545608116 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
20 Hb_001976_020 0.1548991524 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_073808_010 Hb_073808_010 Hb_001189_100 Hb_001189_100 Hb_073808_010--Hb_001189_100 Hb_002671_060 Hb_002671_060 Hb_073808_010--Hb_002671_060 Hb_000085_380 Hb_000085_380 Hb_073808_010--Hb_000085_380 Hb_001728_130 Hb_001728_130 Hb_073808_010--Hb_001728_130 Hb_001247_270 Hb_001247_270 Hb_073808_010--Hb_001247_270 Hb_042202_020 Hb_042202_020 Hb_073808_010--Hb_042202_020 Hb_000398_140 Hb_000398_140 Hb_001189_100--Hb_000398_140 Hb_004079_100 Hb_004079_100 Hb_001189_100--Hb_004079_100 Hb_019026_050 Hb_019026_050 Hb_001189_100--Hb_019026_050 Hb_008066_080 Hb_008066_080 Hb_001189_100--Hb_008066_080 Hb_000594_160 Hb_000594_160 Hb_001189_100--Hb_000594_160 Hb_002003_040 Hb_002003_040 Hb_002671_060--Hb_002003_040 Hb_006934_020 Hb_006934_020 Hb_002671_060--Hb_006934_020 Hb_003226_030 Hb_003226_030 Hb_002671_060--Hb_003226_030 Hb_002671_060--Hb_042202_020 Hb_002671_060--Hb_000085_380 Hb_002833_020 Hb_002833_020 Hb_000085_380--Hb_002833_020 Hb_000318_170 Hb_000318_170 Hb_000085_380--Hb_000318_170 Hb_001221_390 Hb_001221_390 Hb_000085_380--Hb_001221_390 Hb_001008_110 Hb_001008_110 Hb_000085_380--Hb_001008_110 Hb_033234_010 Hb_033234_010 Hb_000085_380--Hb_033234_010 Hb_003106_110 Hb_003106_110 Hb_000085_380--Hb_003106_110 Hb_000095_070 Hb_000095_070 Hb_001728_130--Hb_000095_070 Hb_014361_040 Hb_014361_040 Hb_001728_130--Hb_014361_040 Hb_135720_010 Hb_135720_010 Hb_001728_130--Hb_135720_010 Hb_005545_110 Hb_005545_110 Hb_001728_130--Hb_005545_110 Hb_164117_010 Hb_164117_010 Hb_001728_130--Hb_164117_010 Hb_029584_100 Hb_029584_100 Hb_001247_270--Hb_029584_100 Hb_009535_030 Hb_009535_030 Hb_001247_270--Hb_009535_030 Hb_000959_120 Hb_000959_120 Hb_001247_270--Hb_000959_120 Hb_003006_080 Hb_003006_080 Hb_001247_270--Hb_003006_080 Hb_004522_030 Hb_004522_030 Hb_001247_270--Hb_004522_030 Hb_042202_020--Hb_033234_010 Hb_001268_300 Hb_001268_300 Hb_042202_020--Hb_001268_300 Hb_042202_020--Hb_001008_110 Hb_042202_020--Hb_002833_020 Hb_000527_140 Hb_000527_140 Hb_042202_020--Hb_000527_140 Hb_003142_060 Hb_003142_060 Hb_042202_020--Hb_003142_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0246849 0.239591 0.160844 0.414723 0.0132341 0.0123436
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.00840463 0.032289 0.259636 0.216168

CAGE analysis