Hb_002671_060

Information

Type -
Description -
Location Contig2671: 91511-93787
Sequence    

Annotation

kegg
ID pop:POPTR_0006s05230g
description POPTRDRAFT_560535; curculin-like lectin family protein
nr
ID XP_012086115.1
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 [Jatropha curcas]
swissprot
ID P93756
description G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 OS=Arabidopsis thaliana GN=SD31 PE=3 SV=1
trembl
ID A0A067JQ57
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21055 PE=4 SV=1
Gene Ontology
ID GO:0004674
description g-type lectin s-receptor-like serine threonine-protein kinase sd3-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27828: 90642-90986 , PASA_asmbl_27829: 92562-93841
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002671_060 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 [Jatropha curcas]
2 Hb_002003_040 0.106714174 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Jatropha curcas]
3 Hb_006934_020 0.107848452 - - hypothetical protein POPTR_0004s09051g [Populus trichocarpa]
4 Hb_073808_010 0.1198410482 desease resistance Gene Name: DUF594 ATP binding protein, putative [Ricinus communis]
5 Hb_003226_030 0.1223375823 - - sucrose synthase 5 [Hevea brasiliensis]
6 Hb_042202_020 0.1226714982 - - Eukaryotic release factor 1-3 isoform 1 [Theobroma cacao]
7 Hb_000085_380 0.1258652306 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002000_130 0.130949354 - - PREDICTED: abscisic stress-ripening protein 2-like [Eucalyptus grandis]
9 Hb_002833_020 0.1316256544 desease resistance Gene Name: LRR_4 PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
10 Hb_005288_210 0.1346808935 - - hypothetical protein VITISV_017217 [Vitis vinifera]
11 Hb_000959_120 0.1359614286 - - PREDICTED: protein BRASSINOSTEROID INSENSITIVE 1 [Jatropha curcas]
12 Hb_001008_110 0.1370738943 - - -
13 Hb_001071_060 0.1384756711 - - Trehalose phosphatase/synthase 5 isoform 1 [Theobroma cacao]
14 Hb_012743_020 0.1395514989 - - serine/threonine protein phosphatase, putative [Ricinus communis]
15 Hb_000095_070 0.1397907139 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001832_210 0.1413629396 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
17 Hb_000003_020 0.1449768588 - - PREDICTED: uncharacterized protein LOC105631161 [Jatropha curcas]
18 Hb_002324_040 0.1449818781 - - PREDICTED: subtilisin-like protease SBT1.6 [Jatropha curcas]
19 Hb_001247_270 0.1463263906 - - PREDICTED: probable L-cysteine desulfhydrase, chloroplastic [Jatropha curcas]
20 Hb_000483_130 0.1474141445 - - PREDICTED: uncharacterized protein LOC105644062 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002671_060 Hb_002671_060 Hb_002003_040 Hb_002003_040 Hb_002671_060--Hb_002003_040 Hb_006934_020 Hb_006934_020 Hb_002671_060--Hb_006934_020 Hb_073808_010 Hb_073808_010 Hb_002671_060--Hb_073808_010 Hb_003226_030 Hb_003226_030 Hb_002671_060--Hb_003226_030 Hb_042202_020 Hb_042202_020 Hb_002671_060--Hb_042202_020 Hb_000085_380 Hb_000085_380 Hb_002671_060--Hb_000085_380 Hb_002420_010 Hb_002420_010 Hb_002003_040--Hb_002420_010 Hb_000261_320 Hb_000261_320 Hb_002003_040--Hb_000261_320 Hb_002833_020 Hb_002833_020 Hb_002003_040--Hb_002833_020 Hb_082683_010 Hb_082683_010 Hb_002003_040--Hb_082683_010 Hb_001008_110 Hb_001008_110 Hb_002003_040--Hb_001008_110 Hb_000847_050 Hb_000847_050 Hb_006934_020--Hb_000847_050 Hb_000739_160 Hb_000739_160 Hb_006934_020--Hb_000739_160 Hb_006634_090 Hb_006634_090 Hb_006934_020--Hb_006634_090 Hb_006934_020--Hb_001008_110 Hb_004421_010 Hb_004421_010 Hb_006934_020--Hb_004421_010 Hb_001189_100 Hb_001189_100 Hb_073808_010--Hb_001189_100 Hb_073808_010--Hb_000085_380 Hb_001728_130 Hb_001728_130 Hb_073808_010--Hb_001728_130 Hb_001247_270 Hb_001247_270 Hb_073808_010--Hb_001247_270 Hb_073808_010--Hb_042202_020 Hb_012743_020 Hb_012743_020 Hb_003226_030--Hb_012743_020 Hb_002000_130 Hb_002000_130 Hb_003226_030--Hb_002000_130 Hb_007943_020 Hb_007943_020 Hb_003226_030--Hb_007943_020 Hb_001143_140 Hb_001143_140 Hb_003226_030--Hb_001143_140 Hb_005357_020 Hb_005357_020 Hb_003226_030--Hb_005357_020 Hb_008092_020 Hb_008092_020 Hb_003226_030--Hb_008092_020 Hb_033234_010 Hb_033234_010 Hb_042202_020--Hb_033234_010 Hb_001268_300 Hb_001268_300 Hb_042202_020--Hb_001268_300 Hb_042202_020--Hb_001008_110 Hb_042202_020--Hb_002833_020 Hb_000527_140 Hb_000527_140 Hb_042202_020--Hb_000527_140 Hb_003142_060 Hb_003142_060 Hb_042202_020--Hb_003142_060 Hb_000085_380--Hb_002833_020 Hb_000318_170 Hb_000318_170 Hb_000085_380--Hb_000318_170 Hb_001221_390 Hb_001221_390 Hb_000085_380--Hb_001221_390 Hb_000085_380--Hb_001008_110 Hb_000085_380--Hb_033234_010 Hb_003106_110 Hb_003106_110 Hb_000085_380--Hb_003106_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.425493 3.19257 1.34218 3.48568 0.0823233 0.12999
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.078251 0.0307865 0.0878556 2.81387 2.44852

CAGE analysis