Hb_002420_010

Information

Type -
Description -
Location Contig2420: 4007-36471
Sequence    

Annotation

kegg
ID tcc:TCM_026500
description NB-ARC domain-containing disease resistance protein, putative isoform 1
nr
ID XP_011023525.1
description PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
swissprot
ID Q9T048
description Disease resistance protein At4g27190 OS=Arabidopsis thaliana GN=At4g27190 PE=2 SV=1
trembl
ID A0A061F9U0
description NB-ARC domain-containing disease resistance protein, putative isoform 1 OS=Theobroma cacao GN=TCM_026500 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002420_010 0.0 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
2 Hb_002003_040 0.0963545033 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Jatropha curcas]
3 Hb_082683_010 0.101979659 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
4 Hb_000215_250 0.1097808833 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
5 Hb_007943_020 0.1248537115 - - transcription factor, putative [Ricinus communis]
6 Hb_000264_340 0.1252180491 - - PREDICTED: callose synthase 11-like isoform X1 [Jatropha curcas]
7 Hb_000793_040 0.129373938 - - PREDICTED: transcription factor LHW [Jatropha curcas]
8 Hb_005288_210 0.1309314903 - - hypothetical protein VITISV_017217 [Vitis vinifera]
9 Hb_003226_030 0.1399642616 - - sucrose synthase 5 [Hevea brasiliensis]
10 Hb_006594_060 0.140941286 transcription factor TF Family: HSF PREDICTED: heat shock factor protein HSF24 [Jatropha curcas]
11 Hb_001268_300 0.141126586 - - conserved hypothetical protein [Ricinus communis]
12 Hb_042202_020 0.1441470706 - - Eukaryotic release factor 1-3 isoform 1 [Theobroma cacao]
13 Hb_003212_010 0.1441741932 - - sucrose transporter 4 [Hevea brasiliensis]
14 Hb_002814_050 0.1476321668 - - PREDICTED: sugar carrier protein A [Jatropha curcas]
15 Hb_000811_010 0.1478065325 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF118 [Jatropha curcas]
16 Hb_001677_230 0.1480689561 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
17 Hb_002671_060 0.1507705133 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 [Jatropha curcas]
18 Hb_000816_020 0.1511073158 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
19 Hb_000020_030 0.1535931531 - - protein binding protein, putative [Ricinus communis]
20 Hb_000236_110 0.1540131395 - - PREDICTED: chaperone protein dnaJ 20, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_002420_010 Hb_002420_010 Hb_002003_040 Hb_002003_040 Hb_002420_010--Hb_002003_040 Hb_082683_010 Hb_082683_010 Hb_002420_010--Hb_082683_010 Hb_000215_250 Hb_000215_250 Hb_002420_010--Hb_000215_250 Hb_007943_020 Hb_007943_020 Hb_002420_010--Hb_007943_020 Hb_000264_340 Hb_000264_340 Hb_002420_010--Hb_000264_340 Hb_000793_040 Hb_000793_040 Hb_002420_010--Hb_000793_040 Hb_002671_060 Hb_002671_060 Hb_002003_040--Hb_002671_060 Hb_000261_320 Hb_000261_320 Hb_002003_040--Hb_000261_320 Hb_002833_020 Hb_002833_020 Hb_002003_040--Hb_002833_020 Hb_002003_040--Hb_082683_010 Hb_001008_110 Hb_001008_110 Hb_002003_040--Hb_001008_110 Hb_001268_300 Hb_001268_300 Hb_082683_010--Hb_001268_300 Hb_000816_020 Hb_000816_020 Hb_082683_010--Hb_000816_020 Hb_000527_140 Hb_000527_140 Hb_082683_010--Hb_000527_140 Hb_001677_230 Hb_001677_230 Hb_082683_010--Hb_001677_230 Hb_002811_020 Hb_002811_020 Hb_000215_250--Hb_002811_020 Hb_013848_030 Hb_013848_030 Hb_000215_250--Hb_013848_030 Hb_003092_050 Hb_003092_050 Hb_000215_250--Hb_003092_050 Hb_001493_020 Hb_001493_020 Hb_000215_250--Hb_001493_020 Hb_000215_250--Hb_082683_010 Hb_000347_420 Hb_000347_420 Hb_007943_020--Hb_000347_420 Hb_003226_030 Hb_003226_030 Hb_007943_020--Hb_003226_030 Hb_029260_010 Hb_029260_010 Hb_007943_020--Hb_029260_010 Hb_000020_030 Hb_000020_030 Hb_007943_020--Hb_000020_030 Hb_002042_160 Hb_002042_160 Hb_007943_020--Hb_002042_160 Hb_138606_020 Hb_138606_020 Hb_007943_020--Hb_138606_020 Hb_003212_010 Hb_003212_010 Hb_000264_340--Hb_003212_010 Hb_005470_040 Hb_005470_040 Hb_000264_340--Hb_005470_040 Hb_109489_010 Hb_109489_010 Hb_000264_340--Hb_109489_010 Hb_123560_050 Hb_123560_050 Hb_000264_340--Hb_123560_050 Hb_000597_080 Hb_000597_080 Hb_000264_340--Hb_000597_080 Hb_001971_020 Hb_001971_020 Hb_000264_340--Hb_001971_020 Hb_001486_060 Hb_001486_060 Hb_000793_040--Hb_001486_060 Hb_002928_120 Hb_002928_120 Hb_000793_040--Hb_002928_120 Hb_005288_210 Hb_005288_210 Hb_000793_040--Hb_005288_210 Hb_020378_010 Hb_020378_010 Hb_000793_040--Hb_020378_010 Hb_000793_040--Hb_001493_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.194514 5.04196 1.12051 4.055 0.26088 0.277113
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.134218 0.130986 0.155112 6.65697 4.62086

CAGE analysis