Hb_002811_020

Information

Type -
Description -
Location Contig2811: 19921-29249
Sequence    

Annotation

kegg
ID sot:102592225
description cysteine synthase-like
nr
ID XP_010104160.1
description Cysteine synthase [Morus notabilis]
swissprot
ID -
description -
trembl
ID W9SMC3
description Cysteine synthase OS=Morus notabilis GN=L484_001471 PE=4 SV=1
Gene Ontology
ID GO:0004124
description cysteine synthase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29377: 19742-21809 , PASA_asmbl_29378: 19742-21809 , PASA_asmbl_29379: 25416-29268 , PASA_asmbl_29380: 27332-29127 , PASA_asmbl_29381: 21649-27713 , PASA_asmbl_29382: 22477-22865
cDNA
(Sanger)
(ID:Location)		 039_P13.ab1: 27162-29268

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002811_020 0.0 - - Cysteine synthase [Morus notabilis]
2 Hb_003842_010 0.1151944627 - - receptor protein kinase, putative [Ricinus communis]
3 Hb_005523_050 0.1179014651 - - hypothetical protein JCGZ_09175 [Jatropha curcas]
4 Hb_011537_020 0.1194046974 - - PREDICTED: uncharacterized serine-rich protein C215.13-like [Jatropha curcas]
5 Hb_000215_250 0.1206189983 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
6 Hb_001018_080 0.1210583261 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003085_080 0.1231688755 - - nucleic acid binding protein, putative [Ricinus communis]
8 Hb_032717_010 0.1281484737 - - unnamed protein product [Vitis vinifera]
9 Hb_003106_110 0.1285337714 - - betaine aldehyde dehydrogenase 1, chloroplastic [Jatropha curcas]
10 Hb_009193_060 0.1314271189 - - PREDICTED: ureide permease 1-like [Jatropha curcas]
11 Hb_001268_300 0.1333354027 - - conserved hypothetical protein [Ricinus communis]
12 Hb_015306_010 0.1340223901 - - PREDICTED: uncharacterized protein LOC105636357 [Jatropha curcas]
13 Hb_082683_010 0.1349025454 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
14 Hb_013848_030 0.136459695 - - PREDICTED: probable aminotransferase TAT2 [Jatropha curcas]
15 Hb_004627_020 0.136602421 - - Protein MLO, putative [Ricinus communis]
16 Hb_000203_080 0.1392474081 - - Xylem bark cysteine peptidase 3 isoform 1 [Theobroma cacao]
17 Hb_000417_280 0.144504748 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004096_220 0.1453761598 - - PREDICTED: uncharacterized protein LOC105638706 isoform X1 [Jatropha curcas]
19 Hb_001141_040 0.1476509666 - - PREDICTED: protein NETWORKED 1A [Jatropha curcas]
20 Hb_000760_080 0.1479664648 - - mutt domain protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002811_020 Hb_002811_020 Hb_003842_010 Hb_003842_010 Hb_002811_020--Hb_003842_010 Hb_005523_050 Hb_005523_050 Hb_002811_020--Hb_005523_050 Hb_011537_020 Hb_011537_020 Hb_002811_020--Hb_011537_020 Hb_000215_250 Hb_000215_250 Hb_002811_020--Hb_000215_250 Hb_001018_080 Hb_001018_080 Hb_002811_020--Hb_001018_080 Hb_003085_080 Hb_003085_080 Hb_002811_020--Hb_003085_080 Hb_001345_010 Hb_001345_010 Hb_003842_010--Hb_001345_010 Hb_005276_220 Hb_005276_220 Hb_003842_010--Hb_005276_220 Hb_002475_030 Hb_002475_030 Hb_003842_010--Hb_002475_030 Hb_000203_080 Hb_000203_080 Hb_003842_010--Hb_000203_080 Hb_003842_010--Hb_003085_080 Hb_009150_060 Hb_009150_060 Hb_003842_010--Hb_009150_060 Hb_032717_010 Hb_032717_010 Hb_005523_050--Hb_032717_010 Hb_005523_050--Hb_003842_010 Hb_006681_030 Hb_006681_030 Hb_005523_050--Hb_006681_030 Hb_005523_050--Hb_001345_010 Hb_003224_010 Hb_003224_010 Hb_005523_050--Hb_003224_010 Hb_011537_020--Hb_001018_080 Hb_008899_030 Hb_008899_030 Hb_011537_020--Hb_008899_030 Hb_000739_160 Hb_000739_160 Hb_011537_020--Hb_000739_160 Hb_002307_010 Hb_002307_010 Hb_011537_020--Hb_002307_010 Hb_004627_020 Hb_004627_020 Hb_011537_020--Hb_004627_020 Hb_015306_010 Hb_015306_010 Hb_011537_020--Hb_015306_010 Hb_002420_010 Hb_002420_010 Hb_000215_250--Hb_002420_010 Hb_013848_030 Hb_013848_030 Hb_000215_250--Hb_013848_030 Hb_003092_050 Hb_003092_050 Hb_000215_250--Hb_003092_050 Hb_001493_020 Hb_001493_020 Hb_000215_250--Hb_001493_020 Hb_082683_010 Hb_082683_010 Hb_000215_250--Hb_082683_010 Hb_001018_080--Hb_002307_010 Hb_001018_080--Hb_008899_030 Hb_001018_080--Hb_003842_010 Hb_001018_080--Hb_000739_160 Hb_004128_090 Hb_004128_090 Hb_003085_080--Hb_004128_090 Hb_003085_080--Hb_002475_030 Hb_003085_080--Hb_000203_080 Hb_010839_010 Hb_010839_010 Hb_003085_080--Hb_010839_010 Hb_001014_150 Hb_001014_150 Hb_003085_080--Hb_001014_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.155153 3.39533 4.11217 3.62896 0.26042 0.248303
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.210732 0.150744 0.0860738 9.13997 5.46962

CAGE analysis