Hb_001014_150

Information

Type -
Description -
Location Contig1014: 133917-140217
Sequence    

Annotation

kegg
ID rcu:RCOM_1438390
description zinc finger protein, putative
nr
ID XP_002512671.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q8VYZ0
description E3 ubiquitin-protein ligase ORTHRUS 2 OS=Arabidopsis thaliana GN=ORTH2 PE=1 SV=1
trembl
ID B9RG02
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_1438390 PE=4 SV=1
Gene Ontology
ID GO:0046872
description e3 ubiquitin-protein ligase orthrus 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00711: 138362-139991
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001014_150 0.0 - - zinc finger protein, putative [Ricinus communis]
2 Hb_006538_010 0.0987548029 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
3 Hb_003085_080 0.1147508604 - - nucleic acid binding protein, putative [Ricinus communis]
4 Hb_002640_040 0.120224068 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_006788_150 0.1273625678 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000661_230 0.1280734029 - - PREDICTED: zinc finger CCCH domain-containing protein 22-like isoform X2 [Jatropha curcas]
7 Hb_010839_010 0.1403132992 - - receptor-kinase, putative [Ricinus communis]
8 Hb_000010_200 0.1448362778 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
9 Hb_029576_080 0.1460235854 - - Aspartic proteinase precursor, putative [Ricinus communis]
10 Hb_009785_010 0.1460292857 - - PREDICTED: uncharacterized protein LOC105648749 [Jatropha curcas]
11 Hb_000011_120 0.1471650794 - - PREDICTED: ATPase 10, plasma membrane-type-like [Populus euphratica]
12 Hb_009627_040 0.1475821473 - - Lipase class 3-related protein, putative [Theobroma cacao]
13 Hb_010519_020 0.1484627707 - - hypothetical protein JCGZ_19028 [Jatropha curcas]
14 Hb_005010_040 0.1489523209 - - PREDICTED: uncharacterized protein LOC105630824 [Jatropha curcas]
15 Hb_004128_090 0.1494183925 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 44 [Jatropha curcas]
16 Hb_000453_130 0.1501026826 - - PREDICTED: protein kinase 2A, chloroplastic-like [Jatropha curcas]
17 Hb_005276_220 0.1506456012 transcription factor TF Family: bHLH PREDICTED: basic helix-loop-helix protein A [Jatropha curcas]
18 Hb_003842_010 0.1532232873 - - receptor protein kinase, putative [Ricinus communis]
19 Hb_002200_060 0.1535363992 - - PREDICTED: pleckstrin homology domain-containing family A member 8 [Jatropha curcas]
20 Hb_006711_020 0.1553503017 - - hypothetical protein JCGZ_07258 [Jatropha curcas]

Gene co-expression network

sample Hb_001014_150 Hb_001014_150 Hb_006538_010 Hb_006538_010 Hb_001014_150--Hb_006538_010 Hb_003085_080 Hb_003085_080 Hb_001014_150--Hb_003085_080 Hb_002640_040 Hb_002640_040 Hb_001014_150--Hb_002640_040 Hb_006788_150 Hb_006788_150 Hb_001014_150--Hb_006788_150 Hb_000661_230 Hb_000661_230 Hb_001014_150--Hb_000661_230 Hb_010839_010 Hb_010839_010 Hb_001014_150--Hb_010839_010 Hb_006538_010--Hb_006788_150 Hb_005010_040 Hb_005010_040 Hb_006538_010--Hb_005010_040 Hb_005116_010 Hb_005116_010 Hb_006538_010--Hb_005116_010 Hb_009627_040 Hb_009627_040 Hb_006538_010--Hb_009627_040 Hb_006538_010--Hb_000661_230 Hb_004128_090 Hb_004128_090 Hb_003085_080--Hb_004128_090 Hb_002475_030 Hb_002475_030 Hb_003085_080--Hb_002475_030 Hb_003842_010 Hb_003842_010 Hb_003085_080--Hb_003842_010 Hb_000203_080 Hb_000203_080 Hb_003085_080--Hb_000203_080 Hb_003085_080--Hb_010839_010 Hb_002640_040--Hb_003085_080 Hb_002640_040--Hb_000661_230 Hb_001091_020 Hb_001091_020 Hb_002640_040--Hb_001091_020 Hb_000816_020 Hb_000816_020 Hb_002640_040--Hb_000816_020 Hb_002640_040--Hb_006538_010 Hb_025526_010 Hb_025526_010 Hb_006788_150--Hb_025526_010 Hb_006788_150--Hb_005116_010 Hb_006788_150--Hb_000661_230 Hb_000412_060 Hb_000412_060 Hb_006788_150--Hb_000412_060 Hb_007894_260 Hb_007894_260 Hb_006788_150--Hb_007894_260 Hb_006788_150--Hb_005010_040 Hb_000661_230--Hb_025526_010 Hb_006970_100 Hb_006970_100 Hb_000661_230--Hb_006970_100 Hb_003060_080 Hb_003060_080 Hb_000661_230--Hb_003060_080 Hb_000661_230--Hb_003085_080 Hb_029576_080 Hb_029576_080 Hb_000661_230--Hb_029576_080 Hb_010839_010--Hb_004128_090 Hb_004010_090 Hb_004010_090 Hb_010839_010--Hb_004010_090 Hb_009812_010 Hb_009812_010 Hb_010839_010--Hb_009812_010 Hb_010839_010--Hb_029576_080 Hb_000011_120 Hb_000011_120 Hb_010839_010--Hb_000011_120 Hb_010839_010--Hb_005116_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00954475 0.419302 0.263057 0.224562 0.015433 0.00673774
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0524947 1.19159 0.380464

CAGE analysis