Hb_006538_010

Information

Type -
Description -
Location Contig6538: 7275-8878
Sequence    

Annotation

kegg
ID rcu:RCOM_1308840
description hypothetical protein
nr
ID XP_012082104.1
description PREDICTED: universal stress protein A-like protein [Jatropha curcas]
swissprot
ID P42297
description Universal stress protein YxiE OS=Bacillus subtilis (strain 168) GN=yxiE PE=3 SV=1
trembl
ID A0A067K2Z9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18344 PE=4 SV=1
Gene Ontology
ID GO:0006950
description universal stress protein a-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52604: 7238-8885
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006538_010 0.0 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
2 Hb_001014_150 0.0987548029 - - zinc finger protein, putative [Ricinus communis]
3 Hb_006788_150 0.1247361826 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005010_040 0.1364576963 - - PREDICTED: uncharacterized protein LOC105630824 [Jatropha curcas]
5 Hb_005116_010 0.1368498435 transcription factor TF Family: bHLH PREDICTED: basic helix-loop-helix protein A [Jatropha curcas]
6 Hb_009627_040 0.1465229869 - - Lipase class 3-related protein, putative [Theobroma cacao]
7 Hb_000661_230 0.1470414847 - - PREDICTED: zinc finger CCCH domain-containing protein 22-like isoform X2 [Jatropha curcas]
8 Hb_000010_200 0.1476988996 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
9 Hb_010839_010 0.1504165634 - - receptor-kinase, putative [Ricinus communis]
10 Hb_025526_010 0.1568423268 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104452086 [Eucalyptus grandis]
11 Hb_004128_090 0.1573894926 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 44 [Jatropha curcas]
12 Hb_000453_130 0.1593944127 - - PREDICTED: protein kinase 2A, chloroplastic-like [Jatropha curcas]
13 Hb_008097_020 0.1596219318 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
14 Hb_009812_010 0.1602811301 - - ABC transporter family protein [Hevea brasiliensis]
15 Hb_014037_010 0.1607388961 - - PREDICTED: uncharacterized protein LOC105641871 [Jatropha curcas]
16 Hb_003085_080 0.1613244076 - - nucleic acid binding protein, putative [Ricinus communis]
17 Hb_007894_260 0.1631331439 - - receptor protein kinase, putative [Ricinus communis]
18 Hb_004800_220 0.1638359176 - - PREDICTED: random slug protein 5 [Jatropha curcas]
19 Hb_000011_120 0.1638570733 - - PREDICTED: ATPase 10, plasma membrane-type-like [Populus euphratica]
20 Hb_005211_090 0.1638777986 - - PREDICTED: aluminum-activated malate transporter 4-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_006538_010 Hb_006538_010 Hb_001014_150 Hb_001014_150 Hb_006538_010--Hb_001014_150 Hb_006788_150 Hb_006788_150 Hb_006538_010--Hb_006788_150 Hb_005010_040 Hb_005010_040 Hb_006538_010--Hb_005010_040 Hb_005116_010 Hb_005116_010 Hb_006538_010--Hb_005116_010 Hb_009627_040 Hb_009627_040 Hb_006538_010--Hb_009627_040 Hb_000661_230 Hb_000661_230 Hb_006538_010--Hb_000661_230 Hb_003085_080 Hb_003085_080 Hb_001014_150--Hb_003085_080 Hb_002640_040 Hb_002640_040 Hb_001014_150--Hb_002640_040 Hb_001014_150--Hb_006788_150 Hb_001014_150--Hb_000661_230 Hb_010839_010 Hb_010839_010 Hb_001014_150--Hb_010839_010 Hb_025526_010 Hb_025526_010 Hb_006788_150--Hb_025526_010 Hb_006788_150--Hb_005116_010 Hb_006788_150--Hb_000661_230 Hb_000412_060 Hb_000412_060 Hb_006788_150--Hb_000412_060 Hb_007894_260 Hb_007894_260 Hb_006788_150--Hb_007894_260 Hb_006788_150--Hb_005010_040 Hb_005010_040--Hb_005116_010 Hb_005010_040--Hb_009627_040 Hb_006949_030 Hb_006949_030 Hb_005010_040--Hb_006949_030 Hb_010334_040 Hb_010334_040 Hb_005010_040--Hb_010334_040 Hb_000010_200 Hb_000010_200 Hb_005010_040--Hb_000010_200 Hb_002542_090 Hb_002542_090 Hb_005010_040--Hb_002542_090 Hb_005116_010--Hb_010334_040 Hb_005116_010--Hb_009627_040 Hb_009812_010 Hb_009812_010 Hb_005116_010--Hb_009812_010 Hb_005116_010--Hb_010839_010 Hb_005211_090 Hb_005211_090 Hb_005116_010--Hb_005211_090 Hb_009627_040--Hb_005211_090 Hb_000011_120 Hb_000011_120 Hb_009627_040--Hb_000011_120 Hb_004884_200 Hb_004884_200 Hb_009627_040--Hb_004884_200 Hb_002391_350 Hb_002391_350 Hb_009627_040--Hb_002391_350 Hb_000661_230--Hb_025526_010 Hb_006970_100 Hb_006970_100 Hb_000661_230--Hb_006970_100 Hb_003060_080 Hb_003060_080 Hb_000661_230--Hb_003060_080 Hb_000661_230--Hb_003085_080 Hb_029576_080 Hb_029576_080 Hb_000661_230--Hb_029576_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 5.86997 3.70065 3.45234 0.032719 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0590307 1.37741 22.2863 5.40504

CAGE analysis