Hb_025526_010

Information

Type -
Description -
Location Contig25526: 10253-32408
Sequence    

Annotation

kegg
ID egr:104452086
description uncharacterized LOC104452086
nr
ID XP_010064916.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104452086 [Eucalyptus grandis]
swissprot
ID O81905
description Receptor-like serine/threonine-protein kinase SD1-8 OS=Arabidopsis thaliana GN=SD18 PE=1 SV=1
trembl
ID A0A061F5W9
description S-locus lectin protein kinase family protein OS=Theobroma cacao GN=TCM_031251 PE=4 SV=1
Gene Ontology
ID GO:0000166
description s-locus lectin protein kinase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26629: 18096-18616 , PASA_asmbl_26630: 21524-23797
cDNA
(Sanger)
(ID:Location)		 028_C07.ab1: 22687-23605

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025526_010 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104452086 [Eucalyptus grandis]
2 Hb_006788_150 0.0836950897 - - conserved hypothetical protein [Ricinus communis]
3 Hb_056101_010 0.0841903665 - - hypothetical protein POPTR_0391s00200g [Populus trichocarpa]
4 Hb_000661_230 0.0977387807 - - PREDICTED: zinc finger CCCH domain-containing protein 22-like isoform X2 [Jatropha curcas]
5 Hb_000422_020 0.1081170208 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
6 Hb_004881_060 0.1094183068 transcription factor TF Family: WRKY hypothetical protein POPTR_0005s22480g [Populus trichocarpa]
7 Hb_003060_080 0.1109800904 - - PREDICTED: acyl-CoA--sterol O-acyltransferase 1 [Jatropha curcas]
8 Hb_008692_010 0.1139732721 - - putative polyol transported protein 2 [Hevea brasiliensis]
9 Hb_005116_010 0.1179950851 transcription factor TF Family: bHLH PREDICTED: basic helix-loop-helix protein A [Jatropha curcas]
10 Hb_007894_260 0.1185132026 - - receptor protein kinase, putative [Ricinus communis]
11 Hb_003090_180 0.1216047003 - - PREDICTED: uncharacterized protein LOC105646674 [Jatropha curcas]
12 Hb_008768_010 0.1270025141 - - PREDICTED: equilibrative nucleotide transporter 8 isoform X1 [Jatropha curcas]
13 Hb_000230_230 0.1273512992 - - hydrolase, putative [Ricinus communis]
14 Hb_018591_050 0.129619386 - - PREDICTED: uncharacterized protein LOC105636336 [Jatropha curcas]
15 Hb_006970_100 0.1304652038 - - UDP-glucosyltransferase, putative [Ricinus communis]
16 Hb_000575_110 0.1340152197 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
17 Hb_001104_210 0.1348408574 - - hypothetical protein JCGZ_23620 [Jatropha curcas]
18 Hb_001136_030 0.1385983082 - - PREDICTED: mediator of RNA polymerase II transcription subunit 25-like [Jatropha curcas]
19 Hb_014037_010 0.141706393 - - PREDICTED: uncharacterized protein LOC105641871 [Jatropha curcas]
20 Hb_000412_060 0.1435785899 - - hypothetical protein JCGZ_18814 [Jatropha curcas]

Gene co-expression network

sample Hb_025526_010 Hb_025526_010 Hb_006788_150 Hb_006788_150 Hb_025526_010--Hb_006788_150 Hb_056101_010 Hb_056101_010 Hb_025526_010--Hb_056101_010 Hb_000661_230 Hb_000661_230 Hb_025526_010--Hb_000661_230 Hb_000422_020 Hb_000422_020 Hb_025526_010--Hb_000422_020 Hb_004881_060 Hb_004881_060 Hb_025526_010--Hb_004881_060 Hb_003060_080 Hb_003060_080 Hb_025526_010--Hb_003060_080 Hb_005116_010 Hb_005116_010 Hb_006788_150--Hb_005116_010 Hb_006788_150--Hb_000661_230 Hb_000412_060 Hb_000412_060 Hb_006788_150--Hb_000412_060 Hb_007894_260 Hb_007894_260 Hb_006788_150--Hb_007894_260 Hb_005010_040 Hb_005010_040 Hb_006788_150--Hb_005010_040 Hb_000575_110 Hb_000575_110 Hb_056101_010--Hb_000575_110 Hb_056101_010--Hb_004881_060 Hb_056101_010--Hb_000422_020 Hb_056101_010--Hb_005116_010 Hb_009486_100 Hb_009486_100 Hb_056101_010--Hb_009486_100 Hb_006970_100 Hb_006970_100 Hb_000661_230--Hb_006970_100 Hb_000661_230--Hb_003060_080 Hb_003085_080 Hb_003085_080 Hb_000661_230--Hb_003085_080 Hb_029576_080 Hb_029576_080 Hb_000661_230--Hb_029576_080 Hb_000422_020--Hb_000575_110 Hb_000683_010 Hb_000683_010 Hb_000422_020--Hb_000683_010 Hb_008768_010 Hb_008768_010 Hb_000422_020--Hb_008768_010 Hb_003900_050 Hb_003900_050 Hb_000422_020--Hb_003900_050 Hb_003090_180 Hb_003090_180 Hb_004881_060--Hb_003090_180 Hb_001104_210 Hb_001104_210 Hb_004881_060--Hb_001104_210 Hb_004881_060--Hb_003900_050 Hb_000205_210 Hb_000205_210 Hb_004881_060--Hb_000205_210 Hb_001105_200 Hb_001105_200 Hb_004881_060--Hb_001105_200 Hb_006569_110 Hb_006569_110 Hb_003060_080--Hb_006569_110 Hb_003060_080--Hb_007894_260 Hb_003060_080--Hb_006970_100 Hb_006651_010 Hb_006651_010 Hb_003060_080--Hb_006651_010 Hb_006938_010 Hb_006938_010 Hb_003060_080--Hb_006938_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0229146 0.936163 0.349769 0.540204 0.0254233 0.02307
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.039649 0.0156014 0.014997 4.3827 1.02083

CAGE analysis