Hb_000661_230

Information

Type -
Description -
Location Contig661: 260811-264247
Sequence    

Annotation

kegg
ID pop:POPTR_0009s05520g
description POPTRDRAFT_722961; hypothetical protein
nr
ID XP_012090041.1
description PREDICTED: zinc finger CCCH domain-containing protein 22-like isoform X2 [Jatropha curcas]
swissprot
ID Q10M00
description Zinc finger CCCH domain-containing protein 22 OS=Oryza sativa subsp. japonica GN=Os03g0328900 PE=2 SV=2
trembl
ID A0A067JQ51
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25951 PE=4 SV=1
Gene Ontology
ID GO:0000166
description zinc finger ccch domain-containing protein 53

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52993: 263535-264118
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000661_230 0.0 - - PREDICTED: zinc finger CCCH domain-containing protein 22-like isoform X2 [Jatropha curcas]
2 Hb_025526_010 0.0977387807 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104452086 [Eucalyptus grandis]
3 Hb_006788_150 0.1149306 - - conserved hypothetical protein [Ricinus communis]
4 Hb_006970_100 0.1181141838 - - UDP-glucosyltransferase, putative [Ricinus communis]
5 Hb_003060_080 0.1260726831 - - PREDICTED: acyl-CoA--sterol O-acyltransferase 1 [Jatropha curcas]
6 Hb_003085_080 0.1270376332 - - nucleic acid binding protein, putative [Ricinus communis]
7 Hb_029576_080 0.1278781358 - - Aspartic proteinase precursor, putative [Ricinus communis]
8 Hb_001014_150 0.1280734029 - - zinc finger protein, putative [Ricinus communis]
9 Hb_135554_010 0.1289003339 - - Insulin-degrading enzyme, putative [Ricinus communis]
10 Hb_010839_010 0.1339542673 - - receptor-kinase, putative [Ricinus communis]
11 Hb_056101_010 0.136824378 - - hypothetical protein POPTR_0391s00200g [Populus trichocarpa]
12 Hb_005116_010 0.136896216 transcription factor TF Family: bHLH PREDICTED: basic helix-loop-helix protein A [Jatropha curcas]
13 Hb_033622_020 0.1372683995 - - lipid binding protein, putative [Ricinus communis]
14 Hb_009812_010 0.1374540221 - - ABC transporter family protein [Hevea brasiliensis]
15 Hb_007382_070 0.1380070522 - - PREDICTED: MAPK-interacting and spindle-stabilizing protein-like [Jatropha curcas]
16 Hb_004128_090 0.1394535401 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 44 [Jatropha curcas]
17 Hb_001519_240 0.139835328 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
18 Hb_006651_010 0.1400082617 - - PREDICTED: protein disulfide isomerase-like 1-4-like [Citrus sinensis]
19 Hb_006538_010 0.1470414847 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
20 Hb_002928_220 0.1528712002 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]

Gene co-expression network

sample Hb_000661_230 Hb_000661_230 Hb_025526_010 Hb_025526_010 Hb_000661_230--Hb_025526_010 Hb_006788_150 Hb_006788_150 Hb_000661_230--Hb_006788_150 Hb_006970_100 Hb_006970_100 Hb_000661_230--Hb_006970_100 Hb_003060_080 Hb_003060_080 Hb_000661_230--Hb_003060_080 Hb_003085_080 Hb_003085_080 Hb_000661_230--Hb_003085_080 Hb_029576_080 Hb_029576_080 Hb_000661_230--Hb_029576_080 Hb_025526_010--Hb_006788_150 Hb_056101_010 Hb_056101_010 Hb_025526_010--Hb_056101_010 Hb_000422_020 Hb_000422_020 Hb_025526_010--Hb_000422_020 Hb_004881_060 Hb_004881_060 Hb_025526_010--Hb_004881_060 Hb_025526_010--Hb_003060_080 Hb_005116_010 Hb_005116_010 Hb_006788_150--Hb_005116_010 Hb_000412_060 Hb_000412_060 Hb_006788_150--Hb_000412_060 Hb_007894_260 Hb_007894_260 Hb_006788_150--Hb_007894_260 Hb_005010_040 Hb_005010_040 Hb_006788_150--Hb_005010_040 Hb_006651_010 Hb_006651_010 Hb_006970_100--Hb_006651_010 Hb_007382_070 Hb_007382_070 Hb_006970_100--Hb_007382_070 Hb_002928_220 Hb_002928_220 Hb_006970_100--Hb_002928_220 Hb_006970_100--Hb_003060_080 Hb_033622_020 Hb_033622_020 Hb_006970_100--Hb_033622_020 Hb_006569_110 Hb_006569_110 Hb_006970_100--Hb_006569_110 Hb_003060_080--Hb_006569_110 Hb_003060_080--Hb_007894_260 Hb_003060_080--Hb_006651_010 Hb_006938_010 Hb_006938_010 Hb_003060_080--Hb_006938_010 Hb_004128_090 Hb_004128_090 Hb_003085_080--Hb_004128_090 Hb_002475_030 Hb_002475_030 Hb_003085_080--Hb_002475_030 Hb_003842_010 Hb_003842_010 Hb_003085_080--Hb_003842_010 Hb_000203_080 Hb_000203_080 Hb_003085_080--Hb_000203_080 Hb_010839_010 Hb_010839_010 Hb_003085_080--Hb_010839_010 Hb_001014_150 Hb_001014_150 Hb_003085_080--Hb_001014_150 Hb_001660_050 Hb_001660_050 Hb_029576_080--Hb_001660_050 Hb_029576_080--Hb_010839_010 Hb_000917_120 Hb_000917_120 Hb_029576_080--Hb_000917_120 Hb_009659_040 Hb_009659_040 Hb_029576_080--Hb_009659_040 Hb_000011_120 Hb_000011_120 Hb_029576_080--Hb_000011_120 Hb_170878_050 Hb_170878_050 Hb_029576_080--Hb_170878_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.08062 18.6312 10.6749 12.2828 0.118575 0.45894
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.636786 0.10021 0.888093 80.8378 31.0396

CAGE analysis