Hb_170878_050

Information

Type -
Description -
Location Contig170878: 23799-26791
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa020995mg
description hypothetical protein
nr
ID AAP53315.2
description retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]
swissprot
ID P93295
description Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana GN=AtMg00310 PE=4 SV=1
trembl
ID Q7G3D9
description Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica GN=LOC_Os10g21850 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15957: 27583-27687
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_170878_050 0.0 - - retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]
2 Hb_001660_050 0.0642111689 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Eucalyptus grandis]
3 Hb_029866_110 0.0705587098 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter C family member 10-like [Jatropha curcas]
4 Hb_016637_020 0.0910198949 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
5 Hb_009659_040 0.0928026097 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER [Populus euphratica]
6 Hb_001819_010 0.0960539784 - - PREDICTED: potassium transporter 8 [Jatropha curcas]
7 Hb_001634_080 0.0998431669 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
8 Hb_029576_080 0.1053645762 - - Aspartic proteinase precursor, putative [Ricinus communis]
9 Hb_123560_050 0.1117840418 - - PREDICTED: probable receptor-like protein kinase At5g24010 [Jatropha curcas]
10 Hb_000108_090 0.1125367463 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
11 Hb_107809_010 0.1131083508 - - JHL06P13.14 [Jatropha curcas]
12 Hb_127661_010 0.1188723148 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_005276_220 0.1195751285 transcription factor TF Family: bHLH PREDICTED: basic helix-loop-helix protein A [Jatropha curcas]
14 Hb_000191_100 0.1200583395 - - cytochrome P450, putative [Ricinus communis]
15 Hb_005496_170 0.1214781854 - - sigma factor sigb regulation protein rsbq, putative [Ricinus communis]
16 Hb_006788_100 0.1222125916 - - PREDICTED: uncharacterized protein LOC105649919 isoform X1 [Jatropha curcas]
17 Hb_000917_120 0.1245497142 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003767_010 0.1250557447 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 [Jatropha curcas]
19 Hb_010880_010 0.1267734518 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
20 Hb_002622_010 0.1331858857 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]

Gene co-expression network

sample Hb_170878_050 Hb_170878_050 Hb_001660_050 Hb_001660_050 Hb_170878_050--Hb_001660_050 Hb_029866_110 Hb_029866_110 Hb_170878_050--Hb_029866_110 Hb_016637_020 Hb_016637_020 Hb_170878_050--Hb_016637_020 Hb_009659_040 Hb_009659_040 Hb_170878_050--Hb_009659_040 Hb_001819_010 Hb_001819_010 Hb_170878_050--Hb_001819_010 Hb_001634_080 Hb_001634_080 Hb_170878_050--Hb_001634_080 Hb_002622_010 Hb_002622_010 Hb_001660_050--Hb_002622_010 Hb_001660_050--Hb_009659_040 Hb_001660_050--Hb_029866_110 Hb_029576_080 Hb_029576_080 Hb_001660_050--Hb_029576_080 Hb_000917_120 Hb_000917_120 Hb_001660_050--Hb_000917_120 Hb_123560_050 Hb_123560_050 Hb_029866_110--Hb_123560_050 Hb_029866_110--Hb_016637_020 Hb_029866_110--Hb_009659_040 Hb_029866_110--Hb_001819_010 Hb_127661_010 Hb_127661_010 Hb_016637_020--Hb_127661_010 Hb_000191_100 Hb_000191_100 Hb_016637_020--Hb_000191_100 Hb_003494_180 Hb_003494_180 Hb_016637_020--Hb_003494_180 Hb_007205_020 Hb_007205_020 Hb_016637_020--Hb_007205_020 Hb_009659_040--Hb_000917_120 Hb_138606_020 Hb_138606_020 Hb_009659_040--Hb_138606_020 Hb_000840_050 Hb_000840_050 Hb_009659_040--Hb_000840_050 Hb_001819_010--Hb_123560_050 Hb_006788_100 Hb_006788_100 Hb_001819_010--Hb_006788_100 Hb_001819_010--Hb_000191_100 Hb_001819_010--Hb_009659_040 Hb_000108_090 Hb_000108_090 Hb_001634_080--Hb_000108_090 Hb_107809_010 Hb_107809_010 Hb_001634_080--Hb_107809_010 Hb_005542_040 Hb_005542_040 Hb_001634_080--Hb_005542_040 Hb_001634_080--Hb_127661_010 Hb_007676_040 Hb_007676_040 Hb_001634_080--Hb_007676_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0540906 0.0377753 0.024399 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0873171 0.062226

CAGE analysis