Hb_007205_020

Information

Type -
Description -
Location Contig7205: 14071-19434
Sequence    

Annotation

kegg
ID rcu:RCOM_1576600
description ATP binding protein, putative (EC:2.7.10.2)
nr
ID XP_012087443.1
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
swissprot
ID Q39202
description G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 OS=Arabidopsis thaliana GN=RLK1 PE=2 SV=2
trembl
ID B9RI65
description Serine/threonine-protein kinase OS=Ricinus communis GN=RCOM_1576600 PE=3 SV=1
Gene Ontology
ID GO:0004674
description g-type lectin s-receptor-like serine threonine-protein kinase rlk1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55652: 18665-19128
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007205_020 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
2 Hb_031201_010 0.0694890973 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
3 Hb_002845_020 0.0843695628 - - hypothetical protein POPTR_0012s14920g [Populus trichocarpa]
4 Hb_016637_020 0.0903000778 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
5 Hb_003494_180 0.0957708111 - - PREDICTED: vacuolar amino acid transporter 1-like [Jatropha curcas]
6 Hb_001866_100 0.0972192115 - - PREDICTED: uncharacterized protein LOC104212668 [Nicotiana sylvestris]
7 Hb_005496_170 0.1021103548 - - sigma factor sigb regulation protein rsbq, putative [Ricinus communis]
8 Hb_007035_010 0.1094757681 - - PREDICTED: synaptotagmin-4 isoform X1 [Jatropha curcas]
9 Hb_000191_100 0.1108775642 - - cytochrome P450, putative [Ricinus communis]
10 Hb_031862_200 0.1148605005 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]
11 Hb_000776_020 0.1156947746 transcription factor TF Family: M-type hypothetical protein JCGZ_25594 [Jatropha curcas]
12 Hb_006827_030 0.1158457565 - - oligopeptide transporter, putative [Ricinus communis]
13 Hb_001301_010 0.1178342212 - - receptor protein kinase, putative [Ricinus communis]
14 Hb_017098_050 0.1193235822 - - hypothetical protein POPTR_0001s03540g [Populus trichocarpa]
15 Hb_007113_020 0.1201284576 - - -
16 Hb_001501_020 0.1213040188 - - PREDICTED: receptor-like protein kinase [Jatropha curcas]
17 Hb_000500_360 0.1229539894 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
18 Hb_127661_010 0.1236773591 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_003680_010 0.1242120146 - - UDP-glucosyltransferase, putative [Ricinus communis]
20 Hb_000261_370 0.1244373985 - - -

Gene co-expression network

sample Hb_007205_020 Hb_007205_020 Hb_031201_010 Hb_031201_010 Hb_007205_020--Hb_031201_010 Hb_002845_020 Hb_002845_020 Hb_007205_020--Hb_002845_020 Hb_016637_020 Hb_016637_020 Hb_007205_020--Hb_016637_020 Hb_003494_180 Hb_003494_180 Hb_007205_020--Hb_003494_180 Hb_001866_100 Hb_001866_100 Hb_007205_020--Hb_001866_100 Hb_005496_170 Hb_005496_170 Hb_007205_020--Hb_005496_170 Hb_119327_010 Hb_119327_010 Hb_031201_010--Hb_119327_010 Hb_003680_010 Hb_003680_010 Hb_031201_010--Hb_003680_010 Hb_007035_010 Hb_007035_010 Hb_031201_010--Hb_007035_010 Hb_000776_020 Hb_000776_020 Hb_031201_010--Hb_000776_020 Hb_006827_030 Hb_006827_030 Hb_031201_010--Hb_006827_030 Hb_002845_020--Hb_003494_180 Hb_002845_020--Hb_001866_100 Hb_000049_170 Hb_000049_170 Hb_002845_020--Hb_000049_170 Hb_001301_010 Hb_001301_010 Hb_002845_020--Hb_001301_010 Hb_002845_020--Hb_016637_020 Hb_127661_010 Hb_127661_010 Hb_016637_020--Hb_127661_010 Hb_000191_100 Hb_000191_100 Hb_016637_020--Hb_000191_100 Hb_016637_020--Hb_003494_180 Hb_170878_050 Hb_170878_050 Hb_016637_020--Hb_170878_050 Hb_029866_110 Hb_029866_110 Hb_016637_020--Hb_029866_110 Hb_003494_180--Hb_001866_100 Hb_057321_010 Hb_057321_010 Hb_003494_180--Hb_057321_010 Hb_001856_110 Hb_001856_110 Hb_003494_180--Hb_001856_110 Hb_001866_100--Hb_007035_010 Hb_000009_390 Hb_000009_390 Hb_001866_100--Hb_000009_390 Hb_006588_020 Hb_006588_020 Hb_001866_100--Hb_006588_020 Hb_031862_200 Hb_031862_200 Hb_001866_100--Hb_031862_200 Hb_010880_010 Hb_010880_010 Hb_005496_170--Hb_010880_010 Hb_003224_010 Hb_003224_010 Hb_005496_170--Hb_003224_010 Hb_005496_170--Hb_127661_010 Hb_017098_050 Hb_017098_050 Hb_005496_170--Hb_017098_050 Hb_000261_370 Hb_000261_370 Hb_005496_170--Hb_000261_370 Hb_005496_170--Hb_016637_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.93621 3.52446 1.56033 0 0.0052847
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0685941 0.0431832 0 4.24638 6.47859

CAGE analysis