Hb_001301_010

Information

Type -
Description -
Location Contig1301: 16265-23826
Sequence    

Annotation

kegg
ID rcu:RCOM_0586540
description receptor protein kinase, putative (EC:2.7.11.25 1.3.1.74)
nr
ID XP_002522985.1
description receptor protein kinase, putative [Ricinus communis]
swissprot
ID Q8VZG8
description Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=2 SV=3
trembl
ID B9SAG6
description Receptor protein kinase, putative OS=Ricinus communis GN=RCOM_0586540 PE=4 SV=1
Gene Ontology
ID GO:0005622
description probable lrr receptor-like serine threonine-protein kinase at4g08850

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08996: 16323-16852 , PASA_asmbl_08997: 17410-17691 , PASA_asmbl_08999: 17757-19900
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001301_010 0.0 - - receptor protein kinase, putative [Ricinus communis]
2 Hb_000776_020 0.0754100407 transcription factor TF Family: M-type hypothetical protein JCGZ_25594 [Jatropha curcas]
3 Hb_000416_010 0.0944323858 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]
4 Hb_002845_020 0.0984159732 - - hypothetical protein POPTR_0012s14920g [Populus trichocarpa]
5 Hb_000442_170 0.1067287207 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
6 Hb_001866_100 0.1150797028 - - PREDICTED: uncharacterized protein LOC104212668 [Nicotiana sylvestris]
7 Hb_007205_020 0.1178342212 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
8 Hb_001005_040 0.1257060279 - - -
9 Hb_007035_010 0.1267402105 - - PREDICTED: synaptotagmin-4 isoform X1 [Jatropha curcas]
10 Hb_010311_020 0.1312516745 - - lrr receptor protein kinase, putative [Ricinus communis]
11 Hb_031201_010 0.1365745958 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
12 Hb_002016_130 0.1369753902 desease resistance Gene Name: ABC_membrane multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis]
13 Hb_003992_220 0.1384875632 - - s-receptor kinase, putative [Ricinus communis]
14 Hb_124579_020 0.1394194851 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]
15 Hb_017225_030 0.1406458065 - - PREDICTED: probable cytosolic oligopeptidase A [Jatropha curcas]
16 Hb_031862_200 0.1431102033 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]
17 Hb_003494_180 0.1434384416 - - PREDICTED: vacuolar amino acid transporter 1-like [Jatropha curcas]
18 Hb_006588_020 0.145366361 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
19 Hb_000147_020 0.1456047902 - - PREDICTED: uncharacterized protein LOC105638303 [Jatropha curcas]
20 Hb_017098_050 0.1461862589 - - hypothetical protein POPTR_0001s03540g [Populus trichocarpa]

Gene co-expression network

sample Hb_001301_010 Hb_001301_010 Hb_000776_020 Hb_000776_020 Hb_001301_010--Hb_000776_020 Hb_000416_010 Hb_000416_010 Hb_001301_010--Hb_000416_010 Hb_002845_020 Hb_002845_020 Hb_001301_010--Hb_002845_020 Hb_000442_170 Hb_000442_170 Hb_001301_010--Hb_000442_170 Hb_001866_100 Hb_001866_100 Hb_001301_010--Hb_001866_100 Hb_007205_020 Hb_007205_020 Hb_001301_010--Hb_007205_020 Hb_007850_110 Hb_007850_110 Hb_000776_020--Hb_007850_110 Hb_000776_020--Hb_000416_010 Hb_017098_050 Hb_017098_050 Hb_000776_020--Hb_017098_050 Hb_000776_020--Hb_000442_170 Hb_001109_130 Hb_001109_130 Hb_000776_020--Hb_001109_130 Hb_010311_020 Hb_010311_020 Hb_000416_010--Hb_010311_020 Hb_124579_020 Hb_124579_020 Hb_000416_010--Hb_124579_020 Hb_185474_020 Hb_185474_020 Hb_000416_010--Hb_185474_020 Hb_001109_170 Hb_001109_170 Hb_000416_010--Hb_001109_170 Hb_003494_180 Hb_003494_180 Hb_002845_020--Hb_003494_180 Hb_002845_020--Hb_001866_100 Hb_002845_020--Hb_007205_020 Hb_000049_170 Hb_000049_170 Hb_002845_020--Hb_000049_170 Hb_016637_020 Hb_016637_020 Hb_002845_020--Hb_016637_020 Hb_001963_110 Hb_001963_110 Hb_000442_170--Hb_001963_110 Hb_003992_220 Hb_003992_220 Hb_000442_170--Hb_003992_220 Hb_006594_080 Hb_006594_080 Hb_000442_170--Hb_006594_080 Hb_000191_100 Hb_000191_100 Hb_000442_170--Hb_000191_100 Hb_007035_010 Hb_007035_010 Hb_001866_100--Hb_007035_010 Hb_000009_390 Hb_000009_390 Hb_001866_100--Hb_000009_390 Hb_006588_020 Hb_006588_020 Hb_001866_100--Hb_006588_020 Hb_001866_100--Hb_007205_020 Hb_031862_200 Hb_031862_200 Hb_001866_100--Hb_031862_200 Hb_031201_010 Hb_031201_010 Hb_007205_020--Hb_031201_010 Hb_007205_020--Hb_016637_020 Hb_007205_020--Hb_003494_180 Hb_005496_170 Hb_005496_170 Hb_007205_020--Hb_005496_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.87013 2.43787 1.55946 0 0.0056563
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0277464 0 0.0208982 4.5325 8.04215

CAGE analysis