Hb_003992_220

Information

Type -
Description -
Location Contig3992: 136697-139018
Sequence    

Annotation

kegg
ID rcu:RCOM_0899890
description s-receptor kinase, putative (EC:2.7.10.2)
nr
ID XP_002517632.1
description s-receptor kinase, putative [Ricinus communis]
swissprot
ID Q8RWZ5
description G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 OS=Arabidopsis thaliana GN=SD25 PE=1 SV=1
trembl
ID B9RV63
description Serine/threonine-protein kinase OS=Ricinus communis GN=RCOM_0899890 PE=3 SV=1
Gene Ontology
ID GO:0004674
description g-type lectin s-receptor-like serine threonine-protein kinase sd2-5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39708: 136772-137263 , PASA_asmbl_39710: 137973-139176
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003992_220 0.0 - - s-receptor kinase, putative [Ricinus communis]
2 Hb_170878_060 0.0955218867 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
3 Hb_167211_010 0.1051358321 - - PREDICTED: glutamate receptor 3.4-like isoform X1 [Jatropha curcas]
4 Hb_001778_040 0.1083673691 - - hypothetical protein VITISV_021035 [Vitis vinifera]
5 Hb_002308_060 0.1135672777 - - PREDICTED: cytochrome P450 704C1-like [Jatropha curcas]
6 Hb_001109_130 0.1152153402 - - PREDICTED: coiled-coil domain-containing protein 136 isoform X1 [Jatropha curcas]
7 Hb_001963_110 0.1226013081 - - -
8 Hb_000776_020 0.1281863861 transcription factor TF Family: M-type hypothetical protein JCGZ_25594 [Jatropha curcas]
9 Hb_001607_070 0.1285373665 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
10 Hb_017225_030 0.130773995 - - PREDICTED: probable cytosolic oligopeptidase A [Jatropha curcas]
11 Hb_006594_080 0.131626267 - - beta-glucosidase, putative [Ricinus communis]
12 Hb_000442_170 0.1320809586 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
13 Hb_001109_170 0.1346189444 - - PREDICTED: urea-proton symporter DUR3 isoform X2 [Jatropha curcas]
14 Hb_007850_110 0.1368572635 - - MADS-box transcription factor 3 [Hevea brasiliensis]
15 Hb_001301_010 0.1384875632 - - receptor protein kinase, putative [Ricinus communis]
16 Hb_004943_010 0.1408040311 - - cationic amino acid transporter, putative [Ricinus communis]
17 Hb_001622_020 0.14156278 - - -
18 Hb_000054_130 0.1426264846 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
19 Hb_005332_050 0.14280854 - - hypothetical protein POPTR_0017s10650g [Populus trichocarpa]
20 Hb_124579_020 0.1435077216 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]

Gene co-expression network

sample Hb_003992_220 Hb_003992_220 Hb_170878_060 Hb_170878_060 Hb_003992_220--Hb_170878_060 Hb_167211_010 Hb_167211_010 Hb_003992_220--Hb_167211_010 Hb_001778_040 Hb_001778_040 Hb_003992_220--Hb_001778_040 Hb_002308_060 Hb_002308_060 Hb_003992_220--Hb_002308_060 Hb_001109_130 Hb_001109_130 Hb_003992_220--Hb_001109_130 Hb_001963_110 Hb_001963_110 Hb_003992_220--Hb_001963_110 Hb_001607_070 Hb_001607_070 Hb_170878_060--Hb_001607_070 Hb_007676_060 Hb_007676_060 Hb_170878_060--Hb_007676_060 Hb_038833_010 Hb_038833_010 Hb_170878_060--Hb_038833_010 Hb_170878_060--Hb_002308_060 Hb_000597_080 Hb_000597_080 Hb_170878_060--Hb_000597_080 Hb_000054_130 Hb_000054_130 Hb_167211_010--Hb_000054_130 Hb_167211_010--Hb_001778_040 Hb_001109_170 Hb_001109_170 Hb_167211_010--Hb_001109_170 Hb_001622_020 Hb_001622_020 Hb_167211_010--Hb_001622_020 Hb_124579_020 Hb_124579_020 Hb_167211_010--Hb_124579_020 Hb_005332_050 Hb_005332_050 Hb_167211_010--Hb_005332_050 Hb_001778_040--Hb_001622_020 Hb_001778_040--Hb_000054_130 Hb_000254_060 Hb_000254_060 Hb_001778_040--Hb_000254_060 Hb_001629_050 Hb_001629_050 Hb_001778_040--Hb_001629_050 Hb_002308_060--Hb_000597_080 Hb_002308_060--Hb_001963_110 Hb_002308_060--Hb_001607_070 Hb_092029_010 Hb_092029_010 Hb_002308_060--Hb_092029_010 Hb_017098_050 Hb_017098_050 Hb_001109_130--Hb_017098_050 Hb_010880_010 Hb_010880_010 Hb_001109_130--Hb_010880_010 Hb_000258_210 Hb_000258_210 Hb_001109_130--Hb_000258_210 Hb_007850_110 Hb_007850_110 Hb_001109_130--Hb_007850_110 Hb_004943_010 Hb_004943_010 Hb_001109_130--Hb_004943_010 Hb_005496_170 Hb_005496_170 Hb_001109_130--Hb_005496_170 Hb_000442_170 Hb_000442_170 Hb_001963_110--Hb_000442_170 Hb_001677_230 Hb_001677_230 Hb_001963_110--Hb_001677_230 Hb_000776_020 Hb_000776_020 Hb_001963_110--Hb_000776_020 Hb_002888_060 Hb_002888_060 Hb_001963_110--Hb_002888_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.24289 1.85274 3.81851 0.0157878 0.0153588
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.045202 0 6.21415 8.6003

CAGE analysis