Hb_092029_010

Information

Type -
Description -
Location Contig92029: 937-1269
Sequence    

Annotation

kegg
ID rcu:RCOM_0742270
description Disease resistance protein RPM1, putative (EC:3.1.3.16)
nr
ID XP_002525518.1
description Disease resistance protein RPM1, putative [Ricinus communis]
swissprot
ID Q39214
description Disease resistance protein RPM1 OS=Arabidopsis thaliana GN=RPM1 PE=1 SV=1
trembl
ID B9SHP9
description Disease resistance protein RPM1, putative OS=Ricinus communis GN=RCOM_0742270 PE=4 SV=1
Gene Ontology
ID GO:0004721
description disease resistance protein rpm1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62449: 894-1322
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_092029_010 0.0 - - Disease resistance protein RPM1, putative [Ricinus communis]
2 Hb_005305_030 0.1201998275 - - hypothetical protein JCGZ_25922 [Jatropha curcas]
3 Hb_002308_060 0.1266283172 - - PREDICTED: cytochrome P450 704C1-like [Jatropha curcas]
4 Hb_000264_340 0.1441469035 - - PREDICTED: callose synthase 11-like isoform X1 [Jatropha curcas]
5 Hb_038833_010 0.1497500146 - - polyprotein [Ananas comosus]
6 Hb_000465_450 0.1500655917 - - triacylglycerol lipase, putative [Ricinus communis]
7 Hb_005306_020 0.1520544527 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Jatropha curcas]
8 Hb_028872_100 0.1560131444 - - PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
9 Hb_158534_010 0.1579196356 desease resistance Gene Name: NB-ARC NBS-LRR resistance protein RGH1 [Manihot esculenta]
10 Hb_003799_060 0.15874483 - - hypothetical protein POPTR_0005s22800g [Populus trichocarpa]
11 Hb_000767_010 0.1597010548 - - PREDICTED: geraniol 8-hydroxylase-like isoform X2 [Solanum lycopersicum]
12 Hb_006355_070 0.1632794497 transcription factor TF Family: bHLH Phytochrome-interacting factor, putative [Ricinus communis]
13 Hb_003212_010 0.1668230051 - - sucrose transporter 4 [Hevea brasiliensis]
14 Hb_001357_360 0.1724786998 - - zinc finger protein, putative [Ricinus communis]
15 Hb_005470_040 0.1740912095 - - hypothetical protein POPTR_0015s09760g [Populus trichocarpa]
16 Hb_000597_080 0.1753811986 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like isoform X2 [Jatropha curcas]
17 Hb_008111_010 0.1765354174 - - hypothetical protein VITISV_021527 [Vitis vinifera]
18 Hb_026144_030 0.1766304208 - - PREDICTED: high affinity nitrate transporter 2.5 [Jatropha curcas]
19 Hb_001411_100 0.1770053746 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
20 Hb_002888_050 0.177758478 - - PREDICTED: phospholipase SGR2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_092029_010 Hb_092029_010 Hb_005305_030 Hb_005305_030 Hb_092029_010--Hb_005305_030 Hb_002308_060 Hb_002308_060 Hb_092029_010--Hb_002308_060 Hb_000264_340 Hb_000264_340 Hb_092029_010--Hb_000264_340 Hb_038833_010 Hb_038833_010 Hb_092029_010--Hb_038833_010 Hb_000465_450 Hb_000465_450 Hb_092029_010--Hb_000465_450 Hb_005306_020 Hb_005306_020 Hb_092029_010--Hb_005306_020 Hb_000959_010 Hb_000959_010 Hb_005305_030--Hb_000959_010 Hb_005305_030--Hb_000465_450 Hb_000767_010 Hb_000767_010 Hb_005305_030--Hb_000767_010 Hb_000522_010 Hb_000522_010 Hb_005305_030--Hb_000522_010 Hb_007237_010 Hb_007237_010 Hb_005305_030--Hb_007237_010 Hb_003992_220 Hb_003992_220 Hb_002308_060--Hb_003992_220 Hb_000597_080 Hb_000597_080 Hb_002308_060--Hb_000597_080 Hb_001963_110 Hb_001963_110 Hb_002308_060--Hb_001963_110 Hb_170878_060 Hb_170878_060 Hb_002308_060--Hb_170878_060 Hb_001607_070 Hb_001607_070 Hb_002308_060--Hb_001607_070 Hb_003212_010 Hb_003212_010 Hb_000264_340--Hb_003212_010 Hb_005470_040 Hb_005470_040 Hb_000264_340--Hb_005470_040 Hb_109489_010 Hb_109489_010 Hb_000264_340--Hb_109489_010 Hb_123560_050 Hb_123560_050 Hb_000264_340--Hb_123560_050 Hb_000264_340--Hb_000597_080 Hb_001971_020 Hb_001971_020 Hb_000264_340--Hb_001971_020 Hb_006355_070 Hb_006355_070 Hb_038833_010--Hb_006355_070 Hb_038833_010--Hb_170878_060 Hb_038833_010--Hb_002308_060 Hb_028872_100 Hb_028872_100 Hb_038833_010--Hb_028872_100 Hb_158534_010 Hb_158534_010 Hb_038833_010--Hb_158534_010 Hb_001277_380 Hb_001277_380 Hb_038833_010--Hb_001277_380 Hb_060198_010 Hb_060198_010 Hb_000465_450--Hb_060198_010 Hb_000465_450--Hb_002308_060 Hb_000465_450--Hb_007237_010 Hb_000465_450--Hb_000959_010 Hb_004007_200 Hb_004007_200 Hb_000465_450--Hb_004007_200 Hb_008111_010 Hb_008111_010 Hb_005306_020--Hb_008111_010 Hb_005306_020--Hb_001971_020 Hb_001357_360 Hb_001357_360 Hb_005306_020--Hb_001357_360 Hb_005306_020--Hb_028872_100 Hb_005306_020--Hb_000264_340 Hb_005306_020--Hb_000767_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.163907 7.44334 1.43247 6.52185 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.291777 0.458839 0.343014 7.45751 13.4766

CAGE analysis