Hb_038833_010

Information

Type -
Description -
Location Contig38833: 77-963
Sequence    

Annotation

kegg
ID vvi:100264062
description uncharacterized LOC100264062
nr
ID ACB28472.1
description polyprotein [Ananas comosus]
swissprot
ID P31843
description RNA-directed DNA polymerase homolog OS=Oenothera berteroana PE=4 SV=1
trembl
ID B4YF15
description Polyprotein (Fragment) OS=Ananas comosus PE=4 SV=1
Gene Ontology
ID GO:0016740
description transposon ty3-g gag-pol polyprotein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_038833_010 0.0 - - polyprotein [Ananas comosus]
2 Hb_006355_070 0.0843327847 transcription factor TF Family: bHLH Phytochrome-interacting factor, putative [Ricinus communis]
3 Hb_170878_060 0.1217893923 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
4 Hb_002308_060 0.1332526425 - - PREDICTED: cytochrome P450 704C1-like [Jatropha curcas]
5 Hb_028872_100 0.1440545268 - - PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
6 Hb_158534_010 0.1458086568 desease resistance Gene Name: NB-ARC NBS-LRR resistance protein RGH1 [Manihot esculenta]
7 Hb_001277_380 0.1470360765 - - PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 3 [Tarenaya hassleriana]
8 Hb_003992_220 0.1490292591 - - s-receptor kinase, putative [Ricinus communis]
9 Hb_092029_010 0.1497500146 - - Disease resistance protein RPM1, putative [Ricinus communis]
10 Hb_002876_280 0.1506578279 - - hypothetical protein RCOM_0686540 [Ricinus communis]
11 Hb_006807_010 0.1514292209 - - hypothetical protein JCGZ_20881 [Jatropha curcas]
12 Hb_000597_080 0.1530506529 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like isoform X2 [Jatropha curcas]
13 Hb_004307_070 0.1544968372 - - kinase, putative [Ricinus communis]
14 Hb_003858_060 0.1573437227 - - Germin-like protein subfamily 1 member 18 [Theobroma cacao]
15 Hb_001778_040 0.1580589624 - - hypothetical protein VITISV_021035 [Vitis vinifera]
16 Hb_001607_070 0.1585087793 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
17 Hb_001629_050 0.1591528078 - - structural constituent of cell wall, putative [Ricinus communis]
18 Hb_005306_020 0.1656529139 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Jatropha curcas]
19 Hb_002888_050 0.1695584147 - - PREDICTED: phospholipase SGR2 isoform X1 [Jatropha curcas]
20 Hb_017225_030 0.1697257197 - - PREDICTED: probable cytosolic oligopeptidase A [Jatropha curcas]

Gene co-expression network

sample Hb_038833_010 Hb_038833_010 Hb_006355_070 Hb_006355_070 Hb_038833_010--Hb_006355_070 Hb_170878_060 Hb_170878_060 Hb_038833_010--Hb_170878_060 Hb_002308_060 Hb_002308_060 Hb_038833_010--Hb_002308_060 Hb_028872_100 Hb_028872_100 Hb_038833_010--Hb_028872_100 Hb_158534_010 Hb_158534_010 Hb_038833_010--Hb_158534_010 Hb_001277_380 Hb_001277_380 Hb_038833_010--Hb_001277_380 Hb_004307_070 Hb_004307_070 Hb_006355_070--Hb_004307_070 Hb_000245_100 Hb_000245_100 Hb_006355_070--Hb_000245_100 Hb_003858_060 Hb_003858_060 Hb_006355_070--Hb_003858_060 Hb_002876_280 Hb_002876_280 Hb_006355_070--Hb_002876_280 Hb_001629_050 Hb_001629_050 Hb_006355_070--Hb_001629_050 Hb_003992_220 Hb_003992_220 Hb_170878_060--Hb_003992_220 Hb_001607_070 Hb_001607_070 Hb_170878_060--Hb_001607_070 Hb_007676_060 Hb_007676_060 Hb_170878_060--Hb_007676_060 Hb_170878_060--Hb_002308_060 Hb_000597_080 Hb_000597_080 Hb_170878_060--Hb_000597_080 Hb_002308_060--Hb_003992_220 Hb_002308_060--Hb_000597_080 Hb_001963_110 Hb_001963_110 Hb_002308_060--Hb_001963_110 Hb_002308_060--Hb_001607_070 Hb_092029_010 Hb_092029_010 Hb_002308_060--Hb_092029_010 Hb_000685_140 Hb_000685_140 Hb_028872_100--Hb_000685_140 Hb_001411_100 Hb_001411_100 Hb_028872_100--Hb_001411_100 Hb_000767_010 Hb_000767_010 Hb_028872_100--Hb_000767_010 Hb_000417_150 Hb_000417_150 Hb_028872_100--Hb_000417_150 Hb_000101_320 Hb_000101_320 Hb_028872_100--Hb_000101_320 Hb_005306_020 Hb_005306_020 Hb_028872_100--Hb_005306_020 Hb_002983_090 Hb_002983_090 Hb_158534_010--Hb_002983_090 Hb_158534_010--Hb_028872_100 Hb_094437_020 Hb_094437_020 Hb_158534_010--Hb_094437_020 Hb_158534_010--Hb_092029_010 Hb_067472_010 Hb_067472_010 Hb_158534_010--Hb_067472_010 Hb_016564_050 Hb_016564_050 Hb_001277_380--Hb_016564_050 Hb_007295_020 Hb_007295_020 Hb_001277_380--Hb_007295_020 Hb_145080_010 Hb_145080_010 Hb_001277_380--Hb_145080_010 Hb_001277_380--Hb_006355_070 Hb_112791_030 Hb_112791_030 Hb_001277_380--Hb_112791_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.182424 0.0262664 0.240834 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.265617 0.473202

CAGE analysis