Hb_067472_010

Information

Type -
Description -
Location Contig67472: 429-1194
Sequence    

Annotation

kegg
ID tcc:TCM_024268
description hypothetical protein
nr
ID XP_007028466.1
description Uncharacterized protein TCM_024268 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061EWC9
description Uncharacterized protein OS=Theobroma cacao GN=TCM_024268 PE=4 SV=1
Gene Ontology
ID GO:0097159
description cysteine-rich rlk (receptor-like protein kinase) 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_067472_010 0.0 - - Uncharacterized protein TCM_024268 [Theobroma cacao]
2 Hb_116784_020 0.0802704545 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
3 Hb_001366_260 0.0879724873 - - T4.15 [Malus x robusta]
4 Hb_001468_040 0.0961212195 - - Uncharacterized protein TCM_024268 [Theobroma cacao]
5 Hb_011472_050 0.1090103076 - - -
6 Hb_000820_100 0.1095112292 - - RNA-directed DNA polymerase [Arachis hypogaea]
7 Hb_002013_030 0.1165135021 - - PREDICTED: uncharacterized protein LOC104799692 [Tarenaya hassleriana]
8 Hb_000352_060 0.1235495404 - - RNA-directed DNA polymerase [Arachis hypogaea]
9 Hb_004312_020 0.1252394151 - - conserved hypothetical protein [Ricinus communis]
10 Hb_007543_020 0.1287046619 - - PREDICTED: uncharacterized protein LOC104229533, partial [Nicotiana sylvestris]
11 Hb_000027_230 0.1293700613 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
12 Hb_001514_150 0.1301932885 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
13 Hb_005092_090 0.130383754 - - cold regulated protein [Manihot esculenta]
14 Hb_002983_090 0.1346299048 - - Altered inheritance of mitochondria protein 32 [Glycine soja]
15 Hb_000237_170 0.1361466775 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 6 [Jatropha curcas]
16 Hb_010565_030 0.1405297037 - - hypothetical protein VITISV_006810 [Vitis vinifera]
17 Hb_041813_040 0.1415235305 - - NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5, truncated - sugar beet mitochondrion (mitochondrion) [Beta vulgaris subsp. vulgaris]
18 Hb_000173_110 0.1422623305 - - putative RNA-directed DNA polymerase (Reverse transcriptase) [Malus domestica]
19 Hb_011649_030 0.1440501515 - - hypothetical protein [Vitis hybrid cultivar]
20 Hb_009434_060 0.1460503973 - - T4.15 [Malus x robusta]

Gene co-expression network

sample Hb_067472_010 Hb_067472_010 Hb_116784_020 Hb_116784_020 Hb_067472_010--Hb_116784_020 Hb_001366_260 Hb_001366_260 Hb_067472_010--Hb_001366_260 Hb_001468_040 Hb_001468_040 Hb_067472_010--Hb_001468_040 Hb_011472_050 Hb_011472_050 Hb_067472_010--Hb_011472_050 Hb_000820_100 Hb_000820_100 Hb_067472_010--Hb_000820_100 Hb_002013_030 Hb_002013_030 Hb_067472_010--Hb_002013_030 Hb_116784_020--Hb_001366_260 Hb_000352_060 Hb_000352_060 Hb_116784_020--Hb_000352_060 Hb_116784_020--Hb_001468_040 Hb_000027_230 Hb_000027_230 Hb_116784_020--Hb_000027_230 Hb_116784_020--Hb_000820_100 Hb_001366_260--Hb_000820_100 Hb_007543_020 Hb_007543_020 Hb_001366_260--Hb_007543_020 Hb_000173_110 Hb_000173_110 Hb_001366_260--Hb_000173_110 Hb_005092_090 Hb_005092_090 Hb_001366_260--Hb_005092_090 Hb_000237_170 Hb_000237_170 Hb_001468_040--Hb_000237_170 Hb_001468_040--Hb_001366_260 Hb_004312_020 Hb_004312_020 Hb_001468_040--Hb_004312_020 Hb_002983_090 Hb_002983_090 Hb_001468_040--Hb_002983_090 Hb_010565_030 Hb_010565_030 Hb_011472_050--Hb_010565_030 Hb_005542_010 Hb_005542_010 Hb_011472_050--Hb_005542_010 Hb_011472_050--Hb_001366_260 Hb_011472_050--Hb_000173_110 Hb_009434_060 Hb_009434_060 Hb_011472_050--Hb_009434_060 Hb_000820_100--Hb_007543_020 Hb_004520_010 Hb_004520_010 Hb_000820_100--Hb_004520_010 Hb_000820_100--Hb_000173_110 Hb_000123_340 Hb_000123_340 Hb_000820_100--Hb_000123_340 Hb_002013_030--Hb_116784_020 Hb_002013_030--Hb_001366_260 Hb_002013_030--Hb_007543_020 Hb_011649_030 Hb_011649_030 Hb_002013_030--Hb_011649_030 Hb_002013_030--Hb_000820_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0826471 5.88438 2.22037 2.77914 0.288895 0.617172
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.118007 3.46131 16.3449

CAGE analysis