Hb_011649_030

Information

Type -
Description -
Location Contig11649: 28742-33995
Sequence    

Annotation

kegg
ID tcc:TCM_020052
description Cysteine-rich RLK (RECEPTOR-like protein kinase) 8
nr
ID ABY49842.1
description hypothetical protein [Vitis hybrid cultivar]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID B0FBS2
description Putative uncharacterized protein OS=Vitis hybrid cultivar PE=4 SV=1
Gene Ontology
ID GO:0003676
description cysteine-rich rlk (receptor-like protein kinase) 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011649_030 0.0 - - hypothetical protein [Vitis hybrid cultivar]
2 Hb_000352_060 0.0996168817 - - RNA-directed DNA polymerase [Arachis hypogaea]
3 Hb_003291_030 0.0999723456 - - Gag-pol protein, putative [Solanum demissum]
4 Hb_001385_070 0.1021592844 - - hypothetical protein VITISV_019194 [Vitis vinifera]
5 Hb_127552_050 0.1047195241 - - hypothetical protein VITISV_030752 [Vitis vinifera]
6 Hb_041813_040 0.1166880038 - - NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5, truncated - sugar beet mitochondrion (mitochondrion) [Beta vulgaris subsp. vulgaris]
7 Hb_000574_330 0.1206363582 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
8 Hb_000123_340 0.1275934102 - - PREDICTED: uncharacterized protein LOC105789586 [Gossypium raimondii]
9 Hb_002013_030 0.1340477337 - - PREDICTED: uncharacterized protein LOC104799692 [Tarenaya hassleriana]
10 Hb_001793_040 0.1364040557 - - hypothetical protein VITISV_006810 [Vitis vinifera]
11 Hb_007543_020 0.1375186438 - - PREDICTED: uncharacterized protein LOC104229533, partial [Nicotiana sylvestris]
12 Hb_000820_100 0.1395706655 - - RNA-directed DNA polymerase [Arachis hypogaea]
13 Hb_116784_020 0.143913862 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
14 Hb_067472_010 0.1440501515 - - Uncharacterized protein TCM_024268 [Theobroma cacao]
15 Hb_004312_020 0.1444887161 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001366_260 0.1459726454 - - T4.15 [Malus x robusta]
17 Hb_003687_160 0.1469424939 - - Ran GTPase binding protein, putative [Ricinus communis]
18 Hb_000173_110 0.1483053578 - - putative RNA-directed DNA polymerase (Reverse transcriptase) [Malus domestica]
19 Hb_001946_130 0.1504505373 - - -
20 Hb_003994_070 0.1547446928 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_011649_030 Hb_011649_030 Hb_000352_060 Hb_000352_060 Hb_011649_030--Hb_000352_060 Hb_003291_030 Hb_003291_030 Hb_011649_030--Hb_003291_030 Hb_001385_070 Hb_001385_070 Hb_011649_030--Hb_001385_070 Hb_127552_050 Hb_127552_050 Hb_011649_030--Hb_127552_050 Hb_041813_040 Hb_041813_040 Hb_011649_030--Hb_041813_040 Hb_000574_330 Hb_000574_330 Hb_011649_030--Hb_000574_330 Hb_116784_020 Hb_116784_020 Hb_000352_060--Hb_116784_020 Hb_001345_040 Hb_001345_040 Hb_000352_060--Hb_001345_040 Hb_000173_110 Hb_000173_110 Hb_000352_060--Hb_000173_110 Hb_067472_010 Hb_067472_010 Hb_000352_060--Hb_067472_010 Hb_001468_040 Hb_001468_040 Hb_000352_060--Hb_001468_040 Hb_008484_020 Hb_008484_020 Hb_003291_030--Hb_008484_020 Hb_001946_130 Hb_001946_130 Hb_003291_030--Hb_001946_130 Hb_003291_030--Hb_000574_330 Hb_003291_030--Hb_000352_060 Hb_003687_160 Hb_003687_160 Hb_003291_030--Hb_003687_160 Hb_001385_070--Hb_127552_050 Hb_000123_340 Hb_000123_340 Hb_001385_070--Hb_000123_340 Hb_001793_040 Hb_001793_040 Hb_001385_070--Hb_001793_040 Hb_001385_070--Hb_000574_330 Hb_004520_010 Hb_004520_010 Hb_001385_070--Hb_004520_010 Hb_127552_050--Hb_000123_340 Hb_127552_050--Hb_000574_330 Hb_127552_050--Hb_041813_040 Hb_127552_050--Hb_004520_010 Hb_041813_040--Hb_000574_330 Hb_102602_020 Hb_102602_020 Hb_041813_040--Hb_102602_020 Hb_041813_040--Hb_000352_060 Hb_041813_040--Hb_067472_010 Hb_000574_330--Hb_000123_340 Hb_004109_130 Hb_004109_130 Hb_000574_330--Hb_004109_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0163769 0.274828 0.148959 0.175742 0.0207875 0.0443723
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0123715 0 0 0.223784 1.68683

CAGE analysis