Hb_001946_130

Information

Type -
Description -
Location Contig1946: 169606-171695
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001946_130 0.0 - - -
2 Hb_003291_030 0.1351622681 - - Gag-pol protein, putative [Solanum demissum]
3 Hb_001366_260 0.1386580455 - - T4.15 [Malus x robusta]
4 Hb_007543_020 0.1503093414 - - PREDICTED: uncharacterized protein LOC104229533, partial [Nicotiana sylvestris]
5 Hb_011649_030 0.1504505373 - - hypothetical protein [Vitis hybrid cultivar]
6 Hb_000820_100 0.1525326685 - - RNA-directed DNA polymerase [Arachis hypogaea]
7 Hb_000527_120 0.1531373141 - - hypothetical protein VITISV_027174 [Vitis vinifera]
8 Hb_005092_090 0.1562761003 - - cold regulated protein [Manihot esculenta]
9 Hb_000123_340 0.1601811265 - - PREDICTED: uncharacterized protein LOC105789586 [Gossypium raimondii]
10 Hb_000173_110 0.1607440182 - - putative RNA-directed DNA polymerase (Reverse transcriptase) [Malus domestica]
11 Hb_008484_020 0.1623852488 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
12 Hb_004312_020 0.1625389244 - - conserved hypothetical protein [Ricinus communis]
13 Hb_011218_030 0.1654747447 - - hypothetical protein VITISV_002891 [Vitis vinifera]
14 Hb_000352_060 0.166137284 - - RNA-directed DNA polymerase [Arachis hypogaea]
15 Hb_003302_010 0.1663466017 - - PREDICTED: alpha-dioxygenase 1 [Jatropha curcas]
16 Hb_023738_010 0.1722172774 - - Concanavalin A-like lectin protein kinase family protein [Theobroma cacao]
17 Hb_067472_010 0.1743161218 - - Uncharacterized protein TCM_024268 [Theobroma cacao]
18 Hb_035651_010 0.1743920959 - - receptor-kinase, putative [Ricinus communis]
19 Hb_116784_020 0.1750220113 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
20 Hb_002013_030 0.1761214236 - - PREDICTED: uncharacterized protein LOC104799692 [Tarenaya hassleriana]

Gene co-expression network

sample Hb_001946_130 Hb_001946_130 Hb_003291_030 Hb_003291_030 Hb_001946_130--Hb_003291_030 Hb_001366_260 Hb_001366_260 Hb_001946_130--Hb_001366_260 Hb_007543_020 Hb_007543_020 Hb_001946_130--Hb_007543_020 Hb_011649_030 Hb_011649_030 Hb_001946_130--Hb_011649_030 Hb_000820_100 Hb_000820_100 Hb_001946_130--Hb_000820_100 Hb_000527_120 Hb_000527_120 Hb_001946_130--Hb_000527_120 Hb_003291_030--Hb_011649_030 Hb_008484_020 Hb_008484_020 Hb_003291_030--Hb_008484_020 Hb_000574_330 Hb_000574_330 Hb_003291_030--Hb_000574_330 Hb_000352_060 Hb_000352_060 Hb_003291_030--Hb_000352_060 Hb_003687_160 Hb_003687_160 Hb_003291_030--Hb_003687_160 Hb_001366_260--Hb_000820_100 Hb_116784_020 Hb_116784_020 Hb_001366_260--Hb_116784_020 Hb_067472_010 Hb_067472_010 Hb_001366_260--Hb_067472_010 Hb_001366_260--Hb_007543_020 Hb_000173_110 Hb_000173_110 Hb_001366_260--Hb_000173_110 Hb_005092_090 Hb_005092_090 Hb_001366_260--Hb_005092_090 Hb_007543_020--Hb_000820_100 Hb_007543_020--Hb_116784_020 Hb_009434_060 Hb_009434_060 Hb_007543_020--Hb_009434_060 Hb_000060_130 Hb_000060_130 Hb_007543_020--Hb_000060_130 Hb_000123_340 Hb_000123_340 Hb_007543_020--Hb_000123_340 Hb_011649_030--Hb_000352_060 Hb_001385_070 Hb_001385_070 Hb_011649_030--Hb_001385_070 Hb_127552_050 Hb_127552_050 Hb_011649_030--Hb_127552_050 Hb_041813_040 Hb_041813_040 Hb_011649_030--Hb_041813_040 Hb_011649_030--Hb_000574_330 Hb_004520_010 Hb_004520_010 Hb_000820_100--Hb_004520_010 Hb_000820_100--Hb_000173_110 Hb_000820_100--Hb_116784_020 Hb_000820_100--Hb_000123_340 Hb_000527_120--Hb_000173_110 Hb_142522_040 Hb_142522_040 Hb_000527_120--Hb_142522_040 Hb_000527_120--Hb_001366_260 Hb_000527_120--Hb_000820_100 Hb_000527_120--Hb_009434_060 Hb_000527_120--Hb_007543_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.516452 0.272519 0.126955 0 0.0616623
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0802666 0 0 0.282347 1.87332

CAGE analysis