Hb_008484_020

Information

Type -
Description -
Location Contig8484: 20677-23663
Sequence    

Annotation

kegg
ID eus:EUTSA_v10027465mg
description hypothetical protein
nr
ID XP_009613217.1
description PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
swissprot
ID -
description -
trembl
ID Q2QU62
description Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica GN=LOC_Os12g17350 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008484_020 0.0 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
2 Hb_003291_030 0.1098184162 - - Gag-pol protein, putative [Solanum demissum]
3 Hb_172486_010 0.1391755735 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
4 Hb_003540_070 0.1545318272 - - PREDICTED: uncharacterized protein LOC105179663 [Sesamum indicum]
5 Hb_001946_130 0.1623852488 - - -
6 Hb_011649_030 0.1661165048 - - hypothetical protein [Vitis hybrid cultivar]
7 Hb_007793_030 0.1790907534 - - OSJNBa0074B10.6 [Oryza sativa Japonica Group]
8 Hb_000574_330 0.1808339563 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
9 Hb_003440_080 0.1835300608 - - polyprotein [Citrus endogenous pararetrovirus]
10 Hb_004934_130 0.1843535274 - - 12-oxophytodienoate reductase 2 isoform 1 [Theobroma cacao]
11 Hb_067472_010 0.186541887 - - Uncharacterized protein TCM_024268 [Theobroma cacao]
12 Hb_027337_130 0.1879689799 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like [Jatropha curcas]
13 Hb_000237_170 0.1886065285 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 6 [Jatropha curcas]
14 Hb_000352_060 0.188679308 - - RNA-directed DNA polymerase [Arachis hypogaea]
15 Hb_010863_070 0.1893682258 - - PREDICTED: glutaredoxin-C11 [Jatropha curcas]
16 Hb_012796_030 0.1907607302 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
17 Hb_041813_040 0.1935958567 - - NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5, truncated - sugar beet mitochondrion (mitochondrion) [Beta vulgaris subsp. vulgaris]
18 Hb_066293_010 0.1944847514 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
19 Hb_004291_050 0.1961081973 - - hypothetical protein POPTR_0018s09540g [Populus trichocarpa]
20 Hb_106070_010 0.197059104 - - PREDICTED: uncharacterized protein LOC105793196 [Gossypium raimondii]

Gene co-expression network

sample Hb_008484_020 Hb_008484_020 Hb_003291_030 Hb_003291_030 Hb_008484_020--Hb_003291_030 Hb_172486_010 Hb_172486_010 Hb_008484_020--Hb_172486_010 Hb_003540_070 Hb_003540_070 Hb_008484_020--Hb_003540_070 Hb_001946_130 Hb_001946_130 Hb_008484_020--Hb_001946_130 Hb_011649_030 Hb_011649_030 Hb_008484_020--Hb_011649_030 Hb_007793_030 Hb_007793_030 Hb_008484_020--Hb_007793_030 Hb_003291_030--Hb_011649_030 Hb_003291_030--Hb_001946_130 Hb_000574_330 Hb_000574_330 Hb_003291_030--Hb_000574_330 Hb_000352_060 Hb_000352_060 Hb_003291_030--Hb_000352_060 Hb_003687_160 Hb_003687_160 Hb_003291_030--Hb_003687_160 Hb_149345_010 Hb_149345_010 Hb_172486_010--Hb_149345_010 Hb_002620_040 Hb_002620_040 Hb_172486_010--Hb_002620_040 Hb_001459_020 Hb_001459_020 Hb_172486_010--Hb_001459_020 Hb_172486_010--Hb_003291_030 Hb_029510_060 Hb_029510_060 Hb_172486_010--Hb_029510_060 Hb_003540_070--Hb_003291_030 Hb_001295_080 Hb_001295_080 Hb_003540_070--Hb_001295_080 Hb_023738_010 Hb_023738_010 Hb_003540_070--Hb_023738_010 Hb_000951_070 Hb_000951_070 Hb_003540_070--Hb_000951_070 Hb_003540_070--Hb_029510_060 Hb_001366_260 Hb_001366_260 Hb_001946_130--Hb_001366_260 Hb_007543_020 Hb_007543_020 Hb_001946_130--Hb_007543_020 Hb_001946_130--Hb_011649_030 Hb_000820_100 Hb_000820_100 Hb_001946_130--Hb_000820_100 Hb_000527_120 Hb_000527_120 Hb_001946_130--Hb_000527_120 Hb_011649_030--Hb_000352_060 Hb_001385_070 Hb_001385_070 Hb_011649_030--Hb_001385_070 Hb_127552_050 Hb_127552_050 Hb_011649_030--Hb_127552_050 Hb_041813_040 Hb_041813_040 Hb_011649_030--Hb_041813_040 Hb_011649_030--Hb_000574_330 Hb_000968_070 Hb_000968_070 Hb_007793_030--Hb_000968_070 Hb_006483_120 Hb_006483_120 Hb_007793_030--Hb_006483_120 Hb_007793_030--Hb_003291_030 Hb_182651_020 Hb_182651_020 Hb_007793_030--Hb_182651_020 Hb_002973_120 Hb_002973_120 Hb_007793_030--Hb_002973_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.213802 0.103393 0.202988 0 0.0599689
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0303214 0 0 0.0761493 0.899257

CAGE analysis