Hb_006483_120

Information

Type -
Description -
Location Contig6483: 100143-111948
Sequence    

Annotation

kegg
ID rcu:RCOM_1408470
description DNA binding protein, putative
nr
ID XP_002523591.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID P93788
description Remorin OS=Solanum tuberosum PE=1 SV=1
trembl
ID B9SC72
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_1408470 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52454: 101186-101671
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006483_120 0.0 - - DNA binding protein, putative [Ricinus communis]
2 Hb_182651_020 0.1368121497 - - alcohol dehydrogenase, putative [Ricinus communis]
3 Hb_010620_030 0.1440633873 - - beta-amyrin synthase [Euphorbia tirucalli]
4 Hb_000439_020 0.1505397198 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 3-like [Jatropha curcas]
5 Hb_042463_010 0.1655897732 - - cytochrome c oxidase subunit 2-1 (mitochondrion) (mitochondrion) [Brassica juncea var. tumida]
6 Hb_000574_330 0.1666366044 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
7 Hb_007793_030 0.1693339549 - - OSJNBa0074B10.6 [Oryza sativa Japonica Group]
8 Hb_046117_030 0.1706313259 - - sialyltransferase, putative [Ricinus communis]
9 Hb_129420_010 0.1713261542 transcription factor TF Family: NAC NAC transcription factor 059 [Jatropha curcas]
10 Hb_001793_030 0.1743094845 - - Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Theobroma cacao]
11 Hb_041813_040 0.1752727385 - - NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5, truncated - sugar beet mitochondrion (mitochondrion) [Beta vulgaris subsp. vulgaris]
12 Hb_001221_240 0.184431474 - - conserved hypothetical protein [Ricinus communis]
13 Hb_007933_030 0.1861856384 - - PREDICTED: uncharacterized protein LOC105639932 [Jatropha curcas]
14 Hb_018272_050 0.1875880903 - - hypothetical protein VITISV_037409 [Vitis vinifera]
15 Hb_004712_200 0.1887953277 - - hypothetical protein CICLE_v10010292mg [Citrus clementina]
16 Hb_002759_040 0.1909227375 - - BnaA09g29830D [Brassica napus]
17 Hb_127552_050 0.1925539236 - - hypothetical protein VITISV_030752 [Vitis vinifera]
18 Hb_003291_030 0.1938158942 - - Gag-pol protein, putative [Solanum demissum]
19 Hb_005092_070 0.1949629287 - - Oligopeptide transporter, putative [Ricinus communis]
20 Hb_000920_100 0.197086971 - - o-methyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_006483_120 Hb_006483_120 Hb_182651_020 Hb_182651_020 Hb_006483_120--Hb_182651_020 Hb_010620_030 Hb_010620_030 Hb_006483_120--Hb_010620_030 Hb_000439_020 Hb_000439_020 Hb_006483_120--Hb_000439_020 Hb_042463_010 Hb_042463_010 Hb_006483_120--Hb_042463_010 Hb_000574_330 Hb_000574_330 Hb_006483_120--Hb_000574_330 Hb_007793_030 Hb_007793_030 Hb_006483_120--Hb_007793_030 Hb_062013_010 Hb_062013_010 Hb_182651_020--Hb_062013_010 Hb_000366_030 Hb_000366_030 Hb_182651_020--Hb_000366_030 Hb_001080_150 Hb_001080_150 Hb_182651_020--Hb_001080_150 Hb_000329_080 Hb_000329_080 Hb_182651_020--Hb_000329_080 Hb_001195_370 Hb_001195_370 Hb_182651_020--Hb_001195_370 Hb_001124_230 Hb_001124_230 Hb_010620_030--Hb_001124_230 Hb_000552_010 Hb_000552_010 Hb_010620_030--Hb_000552_010 Hb_003849_070 Hb_003849_070 Hb_010620_030--Hb_003849_070 Hb_000056_110 Hb_000056_110 Hb_010620_030--Hb_000056_110 Hb_010620_030--Hb_000439_020 Hb_004712_200 Hb_004712_200 Hb_000439_020--Hb_004712_200 Hb_010174_100 Hb_010174_100 Hb_000439_020--Hb_010174_100 Hb_000439_020--Hb_000552_010 Hb_000439_020--Hb_042463_010 Hb_016734_040 Hb_016734_040 Hb_042463_010--Hb_016734_040 Hb_041813_040 Hb_041813_040 Hb_042463_010--Hb_041813_040 Hb_001221_240 Hb_001221_240 Hb_042463_010--Hb_001221_240 Hb_000920_100 Hb_000920_100 Hb_042463_010--Hb_000920_100 Hb_169948_010 Hb_169948_010 Hb_042463_010--Hb_169948_010 Hb_000574_330--Hb_041813_040 Hb_127552_050 Hb_127552_050 Hb_000574_330--Hb_127552_050 Hb_011649_030 Hb_011649_030 Hb_000574_330--Hb_011649_030 Hb_001385_070 Hb_001385_070 Hb_000574_330--Hb_001385_070 Hb_000123_340 Hb_000123_340 Hb_000574_330--Hb_000123_340 Hb_004109_130 Hb_004109_130 Hb_000574_330--Hb_004109_130 Hb_000968_070 Hb_000968_070 Hb_007793_030--Hb_000968_070 Hb_008484_020 Hb_008484_020 Hb_007793_030--Hb_008484_020 Hb_003291_030 Hb_003291_030 Hb_007793_030--Hb_003291_030 Hb_007793_030--Hb_182651_020 Hb_002973_120 Hb_002973_120 Hb_007793_030--Hb_002973_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.343259 0.671286 0.527317 1.9224 0 0.339503
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.037332 0.0587348 0.0548187 1.03397 5.67345

CAGE analysis