Hb_016734_040

Information

Type -
Description -
Location Contig16734: 18896-21972
Sequence    

Annotation

kegg
ID rcu:RCOM_0536120
description abhydrolase domain containing, putative
nr
ID XP_002521575.1
description abhydrolase domain containing, putative [Ricinus communis]
swissprot
ID G5EBI4
description Epoxide hydrolase 1 OS=Caenorhabditis elegans GN=ceeh-1 PE=1 SV=1
trembl
ID B9S6F6
description Abhydrolase domain containing, putative OS=Ricinus communis GN=RCOM_0536120 PE=4 SV=1
Gene Ontology
ID GO:0016787
description alpha beta-hydrolases superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15460: 18903-19302 , PASA_asmbl_15461: 19833-21801 , PASA_asmbl_15462: 19833-27664
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_016734_040 0.0 - - abhydrolase domain containing, putative [Ricinus communis]
2 Hb_042463_010 0.1120278578 - - cytochrome c oxidase subunit 2-1 (mitochondrion) (mitochondrion) [Brassica juncea var. tumida]
3 Hb_005183_030 0.1235403314 - - PREDICTED: probable calcium-binding protein CML16 [Jatropha curcas]
4 Hb_169948_010 0.1351462679 - - hypothetical protein VITISV_006524 [Vitis vinifera]
5 Hb_094437_020 0.1366219499 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
6 Hb_149345_010 0.1389259489 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
7 Hb_002631_110 0.1423187524 - - PREDICTED: cytochrome P450 71D9-like [Fragaria vesca subsp. vesca]
8 Hb_000347_320 0.1455861056 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
9 Hb_000207_240 0.146804725 - - hypothetical protein RCOM_0686540 [Ricinus communis]
10 Hb_041813_040 0.1475700364 - - NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5, truncated - sugar beet mitochondrion (mitochondrion) [Beta vulgaris subsp. vulgaris]
11 Hb_006351_120 0.1531155783 - - hypothetical protein CICLE_v10030803mg [Citrus clementina]
12 Hb_066293_010 0.1543109754 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
13 Hb_000920_100 0.1547308871 - - o-methyltransferase, putative [Ricinus communis]
14 Hb_011358_010 0.1550011197 - - -
15 Hb_010863_070 0.1558308772 - - PREDICTED: glutaredoxin-C11 [Jatropha curcas]
16 Hb_008461_070 0.1561949799 - - PREDICTED: ethylene-overproduction protein 1 isoform X1 [Jatropha curcas]
17 Hb_005018_030 0.1566397724 - - hypothetical protein CICLE_v10019811mg [Citrus clementina]
18 Hb_125961_010 0.1613325008 - - ATP binding protein, putative [Ricinus communis]
19 Hb_000193_090 0.1623118404 - - cysteine protease, putative [Ricinus communis]
20 Hb_112791_030 0.1660315625 - - Uncharacterized protein TCM_027940 [Theobroma cacao]

Gene co-expression network

sample Hb_016734_040 Hb_016734_040 Hb_042463_010 Hb_042463_010 Hb_016734_040--Hb_042463_010 Hb_005183_030 Hb_005183_030 Hb_016734_040--Hb_005183_030 Hb_169948_010 Hb_169948_010 Hb_016734_040--Hb_169948_010 Hb_094437_020 Hb_094437_020 Hb_016734_040--Hb_094437_020 Hb_149345_010 Hb_149345_010 Hb_016734_040--Hb_149345_010 Hb_002631_110 Hb_002631_110 Hb_016734_040--Hb_002631_110 Hb_041813_040 Hb_041813_040 Hb_042463_010--Hb_041813_040 Hb_001221_240 Hb_001221_240 Hb_042463_010--Hb_001221_240 Hb_000920_100 Hb_000920_100 Hb_042463_010--Hb_000920_100 Hb_042463_010--Hb_169948_010 Hb_006483_120 Hb_006483_120 Hb_042463_010--Hb_006483_120 Hb_005183_030--Hb_002631_110 Hb_000347_320 Hb_000347_320 Hb_005183_030--Hb_000347_320 Hb_005018_030 Hb_005018_030 Hb_005183_030--Hb_005018_030 Hb_002785_010 Hb_002785_010 Hb_005183_030--Hb_002785_010 Hb_012691_060 Hb_012691_060 Hb_005183_030--Hb_012691_060 Hb_066293_010 Hb_066293_010 Hb_169948_010--Hb_066293_010 Hb_125961_010 Hb_125961_010 Hb_169948_010--Hb_125961_010 Hb_004934_130 Hb_004934_130 Hb_169948_010--Hb_004934_130 Hb_057880_020 Hb_057880_020 Hb_169948_010--Hb_057880_020 Hb_000462_160 Hb_000462_160 Hb_169948_010--Hb_000462_160 Hb_027337_130 Hb_027337_130 Hb_169948_010--Hb_027337_130 Hb_003858_060 Hb_003858_060 Hb_094437_020--Hb_003858_060 Hb_000207_240 Hb_000207_240 Hb_094437_020--Hb_000207_240 Hb_006916_140 Hb_006916_140 Hb_094437_020--Hb_006916_140 Hb_000856_210 Hb_000856_210 Hb_094437_020--Hb_000856_210 Hb_000392_490 Hb_000392_490 Hb_094437_020--Hb_000392_490 Hb_004204_220 Hb_004204_220 Hb_094437_020--Hb_004204_220 Hb_001459_020 Hb_001459_020 Hb_149345_010--Hb_001459_020 Hb_093388_010 Hb_093388_010 Hb_149345_010--Hb_093388_010 Hb_029510_060 Hb_029510_060 Hb_149345_010--Hb_029510_060 Hb_001542_010 Hb_001542_010 Hb_149345_010--Hb_001542_010 Hb_172486_010 Hb_172486_010 Hb_149345_010--Hb_172486_010 Hb_003226_230 Hb_003226_230 Hb_002631_110--Hb_003226_230 Hb_002631_110--Hb_003858_060 Hb_000369_040 Hb_000369_040 Hb_002631_110--Hb_000369_040 Hb_002631_110--Hb_125961_010 Hb_162676_010 Hb_162676_010 Hb_002631_110--Hb_162676_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.530709 14.9677 3.17406 22.1138 0.297381 0.120023
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0891401 0.0701148 0.389652 5.90737 64.7819

CAGE analysis