Hb_000369_040

Information

Type -
Description -
Location Contig369: 63554-66733
Sequence    

Annotation

kegg
ID tcc:TCM_001416
description Ankyrin repeat family protein, putative
nr
ID XP_007048310.1
description Ankyrin repeat family protein, putative [Theobroma cacao]
swissprot
ID Q9C7A2
description Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1
trembl
ID A0A061DJE0
description Ankyrin repeat family protein, putative OS=Theobroma cacao GN=TCM_001416 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37987: 64482-65178
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000369_040 0.0 - - Ankyrin repeat family protein, putative [Theobroma cacao]
2 Hb_002785_010 0.1030458671 transcription factor TF Family: MYB PREDICTED: transcription factor DIVARICATA-like [Jatropha curcas]
3 Hb_003050_330 0.1105266348 - - hypothetical protein JCGZ_04591 [Jatropha curcas]
4 Hb_007666_010 0.1118608275 - - PREDICTED: uncharacterized protein LOC105649266 [Jatropha curcas]
5 Hb_032202_010 0.1144600284 - - PREDICTED: subtilisin-like protease SBT1.1 [Jatropha curcas]
6 Hb_005051_010 0.1216766622 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
7 Hb_001242_040 0.1223251443 - - PREDICTED: myb-related transcription factor, partner of profilin-like [Populus euphratica]
8 Hb_001158_250 0.1256426536 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003494_150 0.1259819492 - - Silicon transporter, putative [Ricinus communis]
10 Hb_007103_020 0.1283791303 - - hypothetical protein POPTR_0007s04191g [Populus trichocarpa]
11 Hb_002631_110 0.1301757766 - - PREDICTED: cytochrome P450 71D9-like [Fragaria vesca subsp. vesca]
12 Hb_022487_010 0.1329519771 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
13 Hb_000201_010 0.1383660073 - - unnamed protein product [Vitis vinifera]
14 Hb_143871_010 0.1390533551 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
15 Hb_000120_480 0.1400696077 - - -
16 Hb_001305_020 0.1411307204 - - PREDICTED: uncharacterized protein LOC102623247 [Citrus sinensis]
17 Hb_003226_230 0.1413350099 - - PREDICTED: transposon Ty3-G Gag-Pol polyprotein [Phoenix dactylifera]
18 Hb_000427_040 0.1449280511 - - Gibberellin receptor GID1, putative [Ricinus communis]
19 Hb_044624_010 0.1453062801 - - -
20 Hb_000140_220 0.1457509107 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 22 [Jatropha curcas]

Gene co-expression network

sample Hb_000369_040 Hb_000369_040 Hb_002785_010 Hb_002785_010 Hb_000369_040--Hb_002785_010 Hb_003050_330 Hb_003050_330 Hb_000369_040--Hb_003050_330 Hb_007666_010 Hb_007666_010 Hb_000369_040--Hb_007666_010 Hb_032202_010 Hb_032202_010 Hb_000369_040--Hb_032202_010 Hb_005051_010 Hb_005051_010 Hb_000369_040--Hb_005051_010 Hb_001242_040 Hb_001242_040 Hb_000369_040--Hb_001242_040 Hb_002785_010--Hb_003050_330 Hb_002785_010--Hb_032202_010 Hb_001158_250 Hb_001158_250 Hb_002785_010--Hb_001158_250 Hb_000752_040 Hb_000752_040 Hb_002785_010--Hb_000752_040 Hb_002785_010--Hb_007666_010 Hb_003494_150 Hb_003494_150 Hb_003050_330--Hb_003494_150 Hb_003008_020 Hb_003008_020 Hb_003050_330--Hb_003008_020 Hb_003050_330--Hb_032202_010 Hb_008689_010 Hb_008689_010 Hb_003050_330--Hb_008689_010 Hb_002193_080 Hb_002193_080 Hb_003050_330--Hb_002193_080 Hb_003050_330--Hb_007666_010 Hb_007666_010--Hb_003494_150 Hb_007666_010--Hb_032202_010 Hb_007666_010--Hb_000752_040 Hb_000347_320 Hb_000347_320 Hb_007666_010--Hb_000347_320 Hb_032202_010--Hb_000752_040 Hb_032202_010--Hb_003494_150 Hb_001305_020 Hb_001305_020 Hb_005051_010--Hb_001305_020 Hb_000427_040 Hb_000427_040 Hb_005051_010--Hb_000427_040 Hb_014700_030 Hb_014700_030 Hb_005051_010--Hb_014700_030 Hb_032779_010 Hb_032779_010 Hb_005051_010--Hb_032779_010 Hb_000622_030 Hb_000622_030 Hb_005051_010--Hb_000622_030 Hb_000434_060 Hb_000434_060 Hb_005051_010--Hb_000434_060 Hb_028227_040 Hb_028227_040 Hb_001242_040--Hb_028227_040 Hb_001242_040--Hb_005051_010 Hb_005211_210 Hb_005211_210 Hb_001242_040--Hb_005211_210 Hb_001242_040--Hb_008689_010 Hb_001242_040--Hb_000434_060 Hb_010222_060 Hb_010222_060 Hb_001242_040--Hb_010222_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0342143 2.84953 1.00499 2.58639 0 0.00748006
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0194227 0 0.02908 0.206482 4.11716

CAGE analysis