Hb_003008_020

Information

Type -
Description -
Location Contig3008: 9712-10191
Sequence    

Annotation

kegg
ID pop:POPTR_0003s11260g
description POPTRDRAFT_554218; auxin-responsive family protein
nr
ID XP_002303522.2
description auxin-responsive family protein [Populus trichocarpa]
swissprot
ID O22150
description Auxin-responsive protein SAUR36 OS=Arabidopsis thaliana GN=SAUR36 PE=2 SV=1
trembl
ID B9GVQ9
description Auxin-responsive family protein OS=Populus trichocarpa GN=POPTR_0003s11260g PE=4 SV=2
Gene Ontology
ID GO:0009733
description auxin-responsive family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003008_020 0.0 - - auxin-responsive family protein [Populus trichocarpa]
2 Hb_003050_330 0.0792005946 - - hypothetical protein JCGZ_04591 [Jatropha curcas]
3 Hb_008689_010 0.0828314782 - - hypothetical protein POPTR_0006s25330g [Populus trichocarpa]
4 Hb_036790_110 0.0886465135 - - hypothetical protein JCGZ_22271 [Jatropha curcas]
5 Hb_077774_010 0.0898913659 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
6 Hb_002193_080 0.0918375926 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
7 Hb_000752_040 0.0970728384 - - PREDICTED: uncharacterized protein LOC104884990 [Beta vulgaris subsp. vulgaris]
8 Hb_001902_040 0.1048648651 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005288_100 0.1074854657 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
10 Hb_005678_020 0.1100705743 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_000462_010 0.1102693699 - - hypothetical protein VITISV_041696 [Vitis vinifera]
12 Hb_005675_070 0.11222881 - - hypothetical protein EUGRSUZ_K01585 [Eucalyptus grandis]
13 Hb_003494_150 0.1122445518 - - Silicon transporter, putative [Ricinus communis]
14 Hb_000271_130 0.1174947474 transcription factor TF Family: C2C2-Dof DNA binding with one finger 2.4, putative [Theobroma cacao]
15 Hb_007666_010 0.1210505117 - - PREDICTED: uncharacterized protein LOC105649266 [Jatropha curcas]
16 Hb_032202_010 0.1228886113 - - PREDICTED: subtilisin-like protease SBT1.1 [Jatropha curcas]
17 Hb_001158_250 0.124209777 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005211_210 0.1242376048 - - lysine and histidine specific transporter family protein [Populus trichocarpa]
19 Hb_002986_030 0.1280966895 - - hypothetical protein JCGZ_12380 [Jatropha curcas]
20 Hb_000749_300 0.1284368645 - - PREDICTED: uncharacterized protein LOC105129180 [Populus euphratica]

Gene co-expression network

sample Hb_003008_020 Hb_003008_020 Hb_003050_330 Hb_003050_330 Hb_003008_020--Hb_003050_330 Hb_008689_010 Hb_008689_010 Hb_003008_020--Hb_008689_010 Hb_036790_110 Hb_036790_110 Hb_003008_020--Hb_036790_110 Hb_077774_010 Hb_077774_010 Hb_003008_020--Hb_077774_010 Hb_002193_080 Hb_002193_080 Hb_003008_020--Hb_002193_080 Hb_000752_040 Hb_000752_040 Hb_003008_020--Hb_000752_040 Hb_003494_150 Hb_003494_150 Hb_003050_330--Hb_003494_150 Hb_032202_010 Hb_032202_010 Hb_003050_330--Hb_032202_010 Hb_003050_330--Hb_008689_010 Hb_003050_330--Hb_002193_080 Hb_007666_010 Hb_007666_010 Hb_003050_330--Hb_007666_010 Hb_008689_010--Hb_002193_080 Hb_005211_210 Hb_005211_210 Hb_008689_010--Hb_005211_210 Hb_005675_070 Hb_005675_070 Hb_008689_010--Hb_005675_070 Hb_001902_040 Hb_001902_040 Hb_008689_010--Hb_001902_040 Hb_005288_100 Hb_005288_100 Hb_036790_110--Hb_005288_100 Hb_005678_020 Hb_005678_020 Hb_036790_110--Hb_005678_020 Hb_009315_010 Hb_009315_010 Hb_036790_110--Hb_009315_010 Hb_000462_010 Hb_000462_010 Hb_036790_110--Hb_000462_010 Hb_005843_010 Hb_005843_010 Hb_036790_110--Hb_005843_010 Hb_001366_300 Hb_001366_300 Hb_077774_010--Hb_001366_300 Hb_026124_020 Hb_026124_020 Hb_077774_010--Hb_026124_020 Hb_077774_010--Hb_001902_040 Hb_077774_010--Hb_005675_070 Hb_009522_010 Hb_009522_010 Hb_077774_010--Hb_009522_010 Hb_002193_080--Hb_005211_210 Hb_000201_010 Hb_000201_010 Hb_002193_080--Hb_000201_010 Hb_002193_080--Hb_005675_070 Hb_000752_040--Hb_032202_010 Hb_000752_040--Hb_007666_010 Hb_000752_040--Hb_003050_330 Hb_002785_010 Hb_002785_010 Hb_000752_040--Hb_002785_010 Hb_005018_030 Hb_005018_030 Hb_000752_040--Hb_005018_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.781741 0.580166 1.65055 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 2.08964

CAGE analysis