Hb_001902_040

Information

Type -
Description -
Location Contig1902: 38305-39051
Sequence    

Annotation

kegg
ID rcu:RCOM_1583120
description hypothetical protein
nr
ID XP_002513682.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RIW3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1583120 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18961: 38293-38886
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001902_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002986_030 0.0516310367 - - hypothetical protein JCGZ_12380 [Jatropha curcas]
3 Hb_000749_300 0.0582527924 - - PREDICTED: uncharacterized protein LOC105129180 [Populus euphratica]
4 Hb_008689_010 0.0931355128 - - hypothetical protein POPTR_0006s25330g [Populus trichocarpa]
5 Hb_015934_090 0.0952282873 - - PREDICTED: uncharacterized protein LOC105640158 [Jatropha curcas]
6 Hb_185726_010 0.0957698459 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
7 Hb_010978_020 0.0973288679 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL12 [Jatropha curcas]
8 Hb_000462_010 0.09737679 - - hypothetical protein VITISV_041696 [Vitis vinifera]
9 Hb_003032_030 0.0974215307 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105639296 isoform X1 [Jatropha curcas]
10 Hb_077774_010 0.0984843366 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
11 Hb_003008_020 0.1048648651 - - auxin-responsive family protein [Populus trichocarpa]
12 Hb_009522_010 0.1086584739 - - hypothetical protein POPTR_0006s18790g [Populus trichocarpa]
13 Hb_000620_040 0.1120194019 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
14 Hb_005843_010 0.1121504348 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
15 Hb_005678_020 0.1131569699 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_000083_210 0.1133844305 - - Major facilitator superfamily protein, putative [Theobroma cacao]
17 Hb_002193_080 0.1140025043 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
18 Hb_009620_110 0.1146408781 - - -
19 Hb_020375_010 0.1160413879 - - PREDICTED: transcription factor IBH1 [Jatropha curcas]
20 Hb_001557_010 0.1184746845 - - PREDICTED: extensin [Jatropha curcas]

Gene co-expression network

sample Hb_001902_040 Hb_001902_040 Hb_002986_030 Hb_002986_030 Hb_001902_040--Hb_002986_030 Hb_000749_300 Hb_000749_300 Hb_001902_040--Hb_000749_300 Hb_008689_010 Hb_008689_010 Hb_001902_040--Hb_008689_010 Hb_015934_090 Hb_015934_090 Hb_001902_040--Hb_015934_090 Hb_185726_010 Hb_185726_010 Hb_001902_040--Hb_185726_010 Hb_010978_020 Hb_010978_020 Hb_001902_040--Hb_010978_020 Hb_002986_030--Hb_000749_300 Hb_002986_030--Hb_010978_020 Hb_002986_030--Hb_015934_090 Hb_003032_030 Hb_003032_030 Hb_002986_030--Hb_003032_030 Hb_001206_100 Hb_001206_100 Hb_002986_030--Hb_001206_100 Hb_000083_210 Hb_000083_210 Hb_000749_300--Hb_000083_210 Hb_000749_300--Hb_185726_010 Hb_000462_010 Hb_000462_010 Hb_000749_300--Hb_000462_010 Hb_000749_300--Hb_015934_090 Hb_002193_080 Hb_002193_080 Hb_008689_010--Hb_002193_080 Hb_005211_210 Hb_005211_210 Hb_008689_010--Hb_005211_210 Hb_003008_020 Hb_003008_020 Hb_008689_010--Hb_003008_020 Hb_003050_330 Hb_003050_330 Hb_008689_010--Hb_003050_330 Hb_005675_070 Hb_005675_070 Hb_008689_010--Hb_005675_070 Hb_000620_040 Hb_000620_040 Hb_015934_090--Hb_000620_040 Hb_015934_090--Hb_003032_030 Hb_147006_010 Hb_147006_010 Hb_015934_090--Hb_147006_010 Hb_163950_050 Hb_163950_050 Hb_015934_090--Hb_163950_050 Hb_009620_110 Hb_009620_110 Hb_185726_010--Hb_009620_110 Hb_001766_130 Hb_001766_130 Hb_185726_010--Hb_001766_130 Hb_009522_010 Hb_009522_010 Hb_185726_010--Hb_009522_010 Hb_185726_010--Hb_000462_010 Hb_000083_220 Hb_000083_220 Hb_010978_020--Hb_000083_220 Hb_000031_210 Hb_000031_210 Hb_010978_020--Hb_000031_210 Hb_005066_040 Hb_005066_040 Hb_010978_020--Hb_005066_040 Hb_010978_020--Hb_000749_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 9.633 12.9363 37.9709 0.0645008 0.0807468
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.443943 0 0 0.21245 38.4899

CAGE analysis