Hb_000083_220

Information

Type -
Description -
Location Contig83: 294219-295154
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59788: 284518-293644 , PASA_asmbl_59789: 290380-293644
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000083_220 0.0 - - -
2 Hb_000031_210 0.0478048414 - - cytochrome P450, putative [Ricinus communis]
3 Hb_010978_020 0.1109775547 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL12 [Jatropha curcas]
4 Hb_001006_110 0.1275957976 - - PREDICTED: uncharacterized protein LOC105634212 [Jatropha curcas]
5 Hb_002986_030 0.141283308 - - hypothetical protein JCGZ_12380 [Jatropha curcas]
6 Hb_001296_060 0.1539222713 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
7 Hb_000061_450 0.1559889468 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001902_040 0.1567198673 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000320_390 0.1609083627 transcription factor TF Family: MYB-related PREDICTED: transcription factor CPC-like [Jatropha curcas]
10 Hb_000749_300 0.1660982036 - - PREDICTED: uncharacterized protein LOC105129180 [Populus euphratica]
11 Hb_012239_060 0.1678992239 - - PREDICTED: nudix hydrolase 18, mitochondrial [Jatropha curcas]
12 Hb_000103_130 0.1685582831 - - PREDICTED: protein NETWORKED 1A [Jatropha curcas]
13 Hb_001206_100 0.1687708002 - - hypothetical protein PRUPE_ppa021915mg, partial [Prunus persica]
14 Hb_001210_060 0.1701773981 - - PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
15 Hb_000160_250 0.1708114576 - - Uncharacterized protein TCM_019235 [Theobroma cacao]
16 Hb_002613_040 0.1710149448 - - phosphate translocator-related family protein [Populus trichocarpa]
17 Hb_003032_030 0.171050044 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105639296 isoform X1 [Jatropha curcas]
18 Hb_002081_020 0.1712068629 transcription factor TF Family: LIM Cysteine and glycine-rich protein, putative [Ricinus communis]
19 Hb_001500_130 0.171601238 - - interferon-induced GTP-binding protein mx, putative [Ricinus communis]
20 Hb_003835_080 0.1720530638 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000083_220 Hb_000083_220 Hb_000031_210 Hb_000031_210 Hb_000083_220--Hb_000031_210 Hb_010978_020 Hb_010978_020 Hb_000083_220--Hb_010978_020 Hb_001006_110 Hb_001006_110 Hb_000083_220--Hb_001006_110 Hb_002986_030 Hb_002986_030 Hb_000083_220--Hb_002986_030 Hb_001296_060 Hb_001296_060 Hb_000083_220--Hb_001296_060 Hb_000061_450 Hb_000061_450 Hb_000083_220--Hb_000061_450 Hb_000031_210--Hb_010978_020 Hb_000031_210--Hb_001006_110 Hb_000031_210--Hb_001296_060 Hb_001999_070 Hb_001999_070 Hb_000031_210--Hb_001999_070 Hb_000031_210--Hb_002986_030 Hb_010978_020--Hb_002986_030 Hb_001902_040 Hb_001902_040 Hb_010978_020--Hb_001902_040 Hb_005066_040 Hb_005066_040 Hb_010978_020--Hb_005066_040 Hb_000749_300 Hb_000749_300 Hb_010978_020--Hb_000749_300 Hb_001500_130 Hb_001500_130 Hb_001006_110--Hb_001500_130 Hb_002387_010 Hb_002387_010 Hb_001006_110--Hb_002387_010 Hb_000076_240 Hb_000076_240 Hb_001006_110--Hb_000076_240 Hb_000318_310 Hb_000318_310 Hb_001006_110--Hb_000318_310 Hb_002986_030--Hb_001902_040 Hb_002986_030--Hb_000749_300 Hb_015934_090 Hb_015934_090 Hb_002986_030--Hb_015934_090 Hb_003032_030 Hb_003032_030 Hb_002986_030--Hb_003032_030 Hb_001206_100 Hb_001206_100 Hb_002986_030--Hb_001206_100 Hb_009522_020 Hb_009522_020 Hb_001296_060--Hb_009522_020 Hb_001296_060--Hb_001206_100 Hb_009421_070 Hb_009421_070 Hb_001296_060--Hb_009421_070 Hb_001098_040 Hb_001098_040 Hb_001296_060--Hb_001098_040 Hb_005183_100 Hb_005183_100 Hb_001296_060--Hb_005183_100 Hb_002942_200 Hb_002942_200 Hb_001296_060--Hb_002942_200 Hb_004650_110 Hb_004650_110 Hb_000061_450--Hb_004650_110 Hb_007163_110 Hb_007163_110 Hb_000061_450--Hb_007163_110 Hb_143629_170 Hb_143629_170 Hb_000061_450--Hb_143629_170 Hb_004943_020 Hb_004943_020 Hb_000061_450--Hb_004943_020 Hb_061256_020 Hb_061256_020 Hb_000061_450--Hb_061256_020 Hb_005730_060 Hb_005730_060 Hb_000061_450--Hb_005730_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.131526 0.33035 0.712835 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0994952 0 0 0.0320491 0.757839

CAGE analysis