Hb_002986_030

Information

Type -
Description -
Location Contig2986: 10170-10463
Sequence    

Annotation

kegg
ID rcu:RCOM_1407400
description hypothetical protein
nr
ID KDP31919.1
description hypothetical protein JCGZ_12380 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KJB0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12380 PE=4 SV=1
Gene Ontology
ID GO:0005509
description ef hand family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31178: 10148-10604
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002986_030 0.0 - - hypothetical protein JCGZ_12380 [Jatropha curcas]
2 Hb_001902_040 0.0516310367 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000749_300 0.0632863486 - - PREDICTED: uncharacterized protein LOC105129180 [Populus euphratica]
4 Hb_010978_020 0.0932763866 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL12 [Jatropha curcas]
5 Hb_015934_090 0.0932887191 - - PREDICTED: uncharacterized protein LOC105640158 [Jatropha curcas]
6 Hb_003032_030 0.093439127 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105639296 isoform X1 [Jatropha curcas]
7 Hb_001206_100 0.098769525 - - hypothetical protein PRUPE_ppa021915mg, partial [Prunus persica]
8 Hb_147006_010 0.1008554344 - - receptor like protein 35 [Arabidopsis thaliana]
9 Hb_163950_050 0.1028981481 - - protein binding protein, putative [Ricinus communis]
10 Hb_185726_010 0.1044504236 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
11 Hb_008689_010 0.1046991682 - - hypothetical protein POPTR_0006s25330g [Populus trichocarpa]
12 Hb_000620_040 0.1068325883 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
13 Hb_009522_020 0.1094655165 - - PREDICTED: protein ECERIFERUM 3 [Jatropha curcas]
14 Hb_009522_010 0.1105017172 - - hypothetical protein POPTR_0006s18790g [Populus trichocarpa]
15 Hb_000083_210 0.1109176696 - - Major facilitator superfamily protein, putative [Theobroma cacao]
16 Hb_000271_130 0.1123399579 transcription factor TF Family: C2C2-Dof DNA binding with one finger 2.4, putative [Theobroma cacao]
17 Hb_001296_060 0.1126902691 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
18 Hb_000462_010 0.1128451273 - - hypothetical protein VITISV_041696 [Vitis vinifera]
19 Hb_077774_010 0.1136836381 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
20 Hb_009620_110 0.1144210444 - - -

Gene co-expression network

sample Hb_002986_030 Hb_002986_030 Hb_001902_040 Hb_001902_040 Hb_002986_030--Hb_001902_040 Hb_000749_300 Hb_000749_300 Hb_002986_030--Hb_000749_300 Hb_010978_020 Hb_010978_020 Hb_002986_030--Hb_010978_020 Hb_015934_090 Hb_015934_090 Hb_002986_030--Hb_015934_090 Hb_003032_030 Hb_003032_030 Hb_002986_030--Hb_003032_030 Hb_001206_100 Hb_001206_100 Hb_002986_030--Hb_001206_100 Hb_001902_040--Hb_000749_300 Hb_008689_010 Hb_008689_010 Hb_001902_040--Hb_008689_010 Hb_001902_040--Hb_015934_090 Hb_185726_010 Hb_185726_010 Hb_001902_040--Hb_185726_010 Hb_001902_040--Hb_010978_020 Hb_000083_210 Hb_000083_210 Hb_000749_300--Hb_000083_210 Hb_000749_300--Hb_185726_010 Hb_000462_010 Hb_000462_010 Hb_000749_300--Hb_000462_010 Hb_000749_300--Hb_015934_090 Hb_000083_220 Hb_000083_220 Hb_010978_020--Hb_000083_220 Hb_000031_210 Hb_000031_210 Hb_010978_020--Hb_000031_210 Hb_005066_040 Hb_005066_040 Hb_010978_020--Hb_005066_040 Hb_010978_020--Hb_000749_300 Hb_000620_040 Hb_000620_040 Hb_015934_090--Hb_000620_040 Hb_015934_090--Hb_003032_030 Hb_147006_010 Hb_147006_010 Hb_015934_090--Hb_147006_010 Hb_163950_050 Hb_163950_050 Hb_015934_090--Hb_163950_050 Hb_003032_030--Hb_000620_040 Hb_003032_030--Hb_147006_010 Hb_020375_010 Hb_020375_010 Hb_003032_030--Hb_020375_010 Hb_009023_010 Hb_009023_010 Hb_003032_030--Hb_009023_010 Hb_003032_030--Hb_000749_300 Hb_005183_100 Hb_005183_100 Hb_001206_100--Hb_005183_100 Hb_009421_070 Hb_009421_070 Hb_001206_100--Hb_009421_070 Hb_002942_200 Hb_002942_200 Hb_001206_100--Hb_002942_200 Hb_009522_020 Hb_009522_020 Hb_001206_100--Hb_009522_020 Hb_016277_030 Hb_016277_030 Hb_001206_100--Hb_016277_030 Hb_004032_190 Hb_004032_190 Hb_001206_100--Hb_004032_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 8.32858 12.3626 37.3706 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.394094 0 0 0.866729 36.0124

CAGE analysis