Hb_000620_040

Information

Type transcription factor
Description TF Family: G2-like
Location Contig620: 77739-79814
Sequence    

Annotation

kegg
ID rcu:RCOM_1235500
description transcription factor, putative
nr
ID XP_002523053.1
description transcription factor, putative [Ricinus communis]
swissprot
ID Q9SAK5
description Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2
trembl
ID B9SAN4
description Transcription factor, putative OS=Ricinus communis GN=RCOM_1235500 PE=4 SV=1
Gene Ontology
ID GO:0003677
description myb family transcription factor apl

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51496: 77811-79915
cDNA
(Sanger)
(ID:Location)		 020_I16.ab1: 77811-79460

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000620_040 0.0 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
2 Hb_003032_030 0.0512825137 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105639296 isoform X1 [Jatropha curcas]
3 Hb_147006_010 0.0657379917 - - receptor like protein 35 [Arabidopsis thaliana]
4 Hb_015934_090 0.0696911819 - - PREDICTED: uncharacterized protein LOC105640158 [Jatropha curcas]
5 Hb_003893_130 0.0851437814 - - metal ion binding protein, putative [Ricinus communis]
6 Hb_010164_030 0.0856065838 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
7 Hb_020375_010 0.0860583952 - - PREDICTED: transcription factor IBH1 [Jatropha curcas]
8 Hb_000000_050 0.0902979991 - - conserved hypothetical protein [Ricinus communis]
9 Hb_133974_010 0.0952922602 - - PREDICTED: glucan endo-1,3-beta-glucosidase 3-like isoform X2 [Populus euphratica]
10 Hb_001289_010 0.1015530741 - - PREDICTED: chaperone protein ClpB4, mitochondrial [Vitis vinifera]
11 Hb_000749_300 0.1017259236 - - PREDICTED: uncharacterized protein LOC105129180 [Populus euphratica]
12 Hb_009023_010 0.1017460235 - - glycosyl hydrolase family 31 family protein [Populus trichocarpa]
13 Hb_012098_160 0.1028027611 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
14 Hb_002073_270 0.1046408969 desease resistance Gene Name: TIR PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
15 Hb_002986_030 0.1068325883 - - hypothetical protein JCGZ_12380 [Jatropha curcas]
16 Hb_001268_150 0.1084442795 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
17 Hb_009522_010 0.1084534879 - - hypothetical protein POPTR_0006s18790g [Populus trichocarpa]
18 Hb_009785_030 0.1094262414 transcription factor TF Family: NAC PREDICTED: NAC transcription factor ONAC010 [Jatropha curcas]
19 Hb_000270_380 0.1101259093 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
20 Hb_185726_010 0.1115427819 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]

Gene co-expression network

sample Hb_000620_040 Hb_000620_040 Hb_003032_030 Hb_003032_030 Hb_000620_040--Hb_003032_030 Hb_147006_010 Hb_147006_010 Hb_000620_040--Hb_147006_010 Hb_015934_090 Hb_015934_090 Hb_000620_040--Hb_015934_090 Hb_003893_130 Hb_003893_130 Hb_000620_040--Hb_003893_130 Hb_010164_030 Hb_010164_030 Hb_000620_040--Hb_010164_030 Hb_020375_010 Hb_020375_010 Hb_000620_040--Hb_020375_010 Hb_003032_030--Hb_015934_090 Hb_003032_030--Hb_147006_010 Hb_003032_030--Hb_020375_010 Hb_009023_010 Hb_009023_010 Hb_003032_030--Hb_009023_010 Hb_000749_300 Hb_000749_300 Hb_003032_030--Hb_000749_300 Hb_147006_010--Hb_010164_030 Hb_133974_010 Hb_133974_010 Hb_147006_010--Hb_133974_010 Hb_147006_010--Hb_015934_090 Hb_004032_290 Hb_004032_290 Hb_147006_010--Hb_004032_290 Hb_015934_090--Hb_000749_300 Hb_163950_050 Hb_163950_050 Hb_015934_090--Hb_163950_050 Hb_002986_030 Hb_002986_030 Hb_015934_090--Hb_002986_030 Hb_001541_210 Hb_001541_210 Hb_003893_130--Hb_001541_210 Hb_003893_130--Hb_003032_030 Hb_005741_030 Hb_005741_030 Hb_003893_130--Hb_005741_030 Hb_000193_180 Hb_000193_180 Hb_003893_130--Hb_000193_180 Hb_005675_070 Hb_005675_070 Hb_003893_130--Hb_005675_070 Hb_003054_070 Hb_003054_070 Hb_010164_030--Hb_003054_070 Hb_000012_350 Hb_000012_350 Hb_010164_030--Hb_000012_350 Hb_001427_100 Hb_001427_100 Hb_010164_030--Hb_001427_100 Hb_001117_050 Hb_001117_050 Hb_010164_030--Hb_001117_050 Hb_036520_030 Hb_036520_030 Hb_010164_030--Hb_036520_030 Hb_000077_250 Hb_000077_250 Hb_020375_010--Hb_000077_250 Hb_000000_050 Hb_000000_050 Hb_020375_010--Hb_000000_050 Hb_000813_070 Hb_000813_070 Hb_020375_010--Hb_000813_070 Hb_009522_010 Hb_009522_010 Hb_020375_010--Hb_009522_010 Hb_004787_120 Hb_004787_120 Hb_020375_010--Hb_004787_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0353517 4.10098 7.30563 18.8236 0.0508416 0.188805
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0317551 0 0.394313 13.0154

CAGE analysis