Hb_004787_120

Information

Type -
Description -
Location Contig4787: 115358-116056
Sequence    

Annotation

kegg
ID pop:POPTR_0011s05430g
description hypothetical protein
nr
ID XP_012080249.1
description PREDICTED: transcription factor TCP14 [Jatropha curcas]
swissprot
ID Q93Z00
description Transcription factor TCP14 OS=Arabidopsis thaliana GN=TCP14 PE=1 SV=1
trembl
ID A0A067K8C7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11614 PE=4 SV=1
Gene Ontology
ID GO:0003700
description transcription factor tcp14-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004787_120 0.0 - - PREDICTED: transcription factor TCP14 [Jatropha curcas]
2 Hb_020375_010 0.0858283805 - - PREDICTED: transcription factor IBH1 [Jatropha curcas]
3 Hb_000813_070 0.098188582 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000358_090 0.1013993073 - - zinc finger protein, putative [Ricinus communis]
5 Hb_001514_050 0.1050267051 - - PREDICTED: probable carbohydrate esterase At4g34215 [Jatropha curcas]
6 Hb_002151_070 0.1083791109 - - PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 2-like [Jatropha curcas]
7 Hb_000000_050 0.1159671182 - - conserved hypothetical protein [Ricinus communis]
8 Hb_005711_030 0.1176833131 - - hypothetical protein RCOM_0460020 [Ricinus communis]
9 Hb_005000_150 0.119111828 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000749_300 0.1197515755 - - PREDICTED: uncharacterized protein LOC105129180 [Populus euphratica]
11 Hb_135052_010 0.1248619861 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
12 Hb_001140_290 0.1254063166 - - hypothetical protein JCGZ_26107 [Jatropha curcas]
13 Hb_009522_010 0.1255694908 - - hypothetical protein POPTR_0006s18790g [Populus trichocarpa]
14 Hb_138977_010 0.1265027494 - - unnamed protein product [Vitis vinifera]
15 Hb_009620_110 0.1278567306 - - -
16 Hb_001289_070 0.1303419303 - - PREDICTED: protein YLS9-like [Jatropha curcas]
17 Hb_002986_030 0.131441666 - - hypothetical protein JCGZ_12380 [Jatropha curcas]
18 Hb_001699_080 0.1323676547 - - unnamed protein product [Coffea canephora]
19 Hb_001902_040 0.1342657727 - - conserved hypothetical protein [Ricinus communis]
20 Hb_015807_130 0.1347036733 - - PREDICTED: kinesin-3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004787_120 Hb_004787_120 Hb_020375_010 Hb_020375_010 Hb_004787_120--Hb_020375_010 Hb_000813_070 Hb_000813_070 Hb_004787_120--Hb_000813_070 Hb_000358_090 Hb_000358_090 Hb_004787_120--Hb_000358_090 Hb_001514_050 Hb_001514_050 Hb_004787_120--Hb_001514_050 Hb_002151_070 Hb_002151_070 Hb_004787_120--Hb_002151_070 Hb_000000_050 Hb_000000_050 Hb_004787_120--Hb_000000_050 Hb_000077_250 Hb_000077_250 Hb_020375_010--Hb_000077_250 Hb_020375_010--Hb_000000_050 Hb_020375_010--Hb_000813_070 Hb_009522_010 Hb_009522_010 Hb_020375_010--Hb_009522_010 Hb_000620_040 Hb_000620_040 Hb_020375_010--Hb_000620_040 Hb_005711_030 Hb_005711_030 Hb_000813_070--Hb_005711_030 Hb_000813_070--Hb_002151_070 Hb_001289_070 Hb_001289_070 Hb_000813_070--Hb_001289_070 Hb_001279_400 Hb_001279_400 Hb_000813_070--Hb_001279_400 Hb_001688_050 Hb_001688_050 Hb_000813_070--Hb_001688_050 Hb_001657_020 Hb_001657_020 Hb_000358_090--Hb_001657_020 Hb_003152_020 Hb_003152_020 Hb_000358_090--Hb_003152_020 Hb_001433_090 Hb_001433_090 Hb_000358_090--Hb_001433_090 Hb_000083_210 Hb_000083_210 Hb_000358_090--Hb_000083_210 Hb_001541_200 Hb_001541_200 Hb_000358_090--Hb_001541_200 Hb_005000_150 Hb_005000_150 Hb_001514_050--Hb_005000_150 Hb_001514_050--Hb_002151_070 Hb_001140_290 Hb_001140_290 Hb_001514_050--Hb_001140_290 Hb_001712_030 Hb_001712_030 Hb_001514_050--Hb_001712_030 Hb_003090_190 Hb_003090_190 Hb_001514_050--Hb_003090_190 Hb_001514_050--Hb_001289_070 Hb_002151_070--Hb_001140_290 Hb_002151_070--Hb_005000_150 Hb_000103_440 Hb_000103_440 Hb_002151_070--Hb_000103_440 Hb_002151_070--Hb_005711_030 Hb_002151_070--Hb_001289_070 Hb_002894_080 Hb_002894_080 Hb_000000_050--Hb_002894_080 Hb_000000_050--Hb_001279_400 Hb_000000_050--Hb_000620_040 Hb_015934_090 Hb_015934_090 Hb_000000_050--Hb_015934_090 Hb_003032_030 Hb_003032_030 Hb_000000_050--Hb_003032_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.238152 0.79909 1.42778 5.91096 0 0.0460528
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0518627 4.91476

CAGE analysis