Hb_000000_050

Information

Type -
Description -
Location Contig0: 78839-79153
Sequence    

Annotation

kegg
ID rcu:RCOM_1593160
description hypothetical protein
nr
ID XP_002510318.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9R7M5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1593160 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000000_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_020375_010 0.0832064654 - - PREDICTED: transcription factor IBH1 [Jatropha curcas]
3 Hb_002894_080 0.087951078 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001279_400 0.0895683036 - - PREDICTED: uncharacterized protein LOC105633544 [Jatropha curcas]
5 Hb_000620_040 0.0902979991 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
6 Hb_015934_090 0.0995673028 - - PREDICTED: uncharacterized protein LOC105640158 [Jatropha curcas]
7 Hb_003032_030 0.1007168122 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105639296 isoform X1 [Jatropha curcas]
8 Hb_001366_300 0.1040020183 - - GERMIN-LIKE protein 10 [Populus trichocarpa]
9 Hb_002043_070 0.104065908 - - PREDICTED: jacalin-related lectin 19 [Jatropha curcas]
10 Hb_133974_010 0.1058733996 - - PREDICTED: glucan endo-1,3-beta-glucosidase 3-like isoform X2 [Populus euphratica]
11 Hb_009785_030 0.1090364989 transcription factor TF Family: NAC PREDICTED: NAC transcription factor ONAC010 [Jatropha curcas]
12 Hb_004917_020 0.1095897254 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF2.2-like isoform X2 [Populus euphratica]
13 Hb_000813_070 0.1126644968 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002973_050 0.1127084384 - - hypothetical protein JCGZ_06491 [Jatropha curcas]
15 Hb_004787_120 0.1159671182 - - PREDICTED: transcription factor TCP14 [Jatropha curcas]
16 Hb_147006_010 0.1189404578 - - receptor like protein 35 [Arabidopsis thaliana]
17 Hb_163950_050 0.1190218635 - - protein binding protein, putative [Ricinus communis]
18 Hb_003893_130 0.1226795477 - - metal ion binding protein, putative [Ricinus communis]
19 Hb_002053_190 0.1246940545 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105639296 isoform X1 [Jatropha curcas]
20 Hb_000137_050 0.1260972266 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000000_050 Hb_000000_050 Hb_020375_010 Hb_020375_010 Hb_000000_050--Hb_020375_010 Hb_002894_080 Hb_002894_080 Hb_000000_050--Hb_002894_080 Hb_001279_400 Hb_001279_400 Hb_000000_050--Hb_001279_400 Hb_000620_040 Hb_000620_040 Hb_000000_050--Hb_000620_040 Hb_015934_090 Hb_015934_090 Hb_000000_050--Hb_015934_090 Hb_003032_030 Hb_003032_030 Hb_000000_050--Hb_003032_030 Hb_000077_250 Hb_000077_250 Hb_020375_010--Hb_000077_250 Hb_000813_070 Hb_000813_070 Hb_020375_010--Hb_000813_070 Hb_009522_010 Hb_009522_010 Hb_020375_010--Hb_009522_010 Hb_004787_120 Hb_004787_120 Hb_020375_010--Hb_004787_120 Hb_020375_010--Hb_000620_040 Hb_002894_080--Hb_001279_400 Hb_004917_020 Hb_004917_020 Hb_002894_080--Hb_004917_020 Hb_002894_080--Hb_000813_070 Hb_002973_050 Hb_002973_050 Hb_002894_080--Hb_002973_050 Hb_001951_080 Hb_001951_080 Hb_002894_080--Hb_001951_080 Hb_001279_400--Hb_004917_020 Hb_001279_400--Hb_002973_050 Hb_001279_400--Hb_000813_070 Hb_002171_050 Hb_002171_050 Hb_001279_400--Hb_002171_050 Hb_000620_040--Hb_003032_030 Hb_147006_010 Hb_147006_010 Hb_000620_040--Hb_147006_010 Hb_000620_040--Hb_015934_090 Hb_003893_130 Hb_003893_130 Hb_000620_040--Hb_003893_130 Hb_010164_030 Hb_010164_030 Hb_000620_040--Hb_010164_030 Hb_015934_090--Hb_003032_030 Hb_000749_300 Hb_000749_300 Hb_015934_090--Hb_000749_300 Hb_015934_090--Hb_147006_010 Hb_163950_050 Hb_163950_050 Hb_015934_090--Hb_163950_050 Hb_002986_030 Hb_002986_030 Hb_015934_090--Hb_002986_030 Hb_003032_030--Hb_147006_010 Hb_003032_030--Hb_020375_010 Hb_009023_010 Hb_009023_010 Hb_003032_030--Hb_009023_010 Hb_003032_030--Hb_000749_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.139291 2.12222 2.30796 9.13266 0.132114 0.130896
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.240178 6.21783

CAGE analysis