Hb_009522_010

Information

Type -
Description -
Location Contig9522: 21918-22295
Sequence    

Annotation

kegg
ID pop:POPTR_0006s18790g
description hypothetical protein
nr
ID XP_006381847.1
description hypothetical protein POPTR_0006s18790g [Populus trichocarpa]
swissprot
ID Q9FHH5
description Protein GLUTAMINE DUMPER 3 OS=Arabidopsis thaliana GN=GDU3 PE=2 SV=1
trembl
ID U5GBM9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s18790g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009522_010 0.0 - - hypothetical protein POPTR_0006s18790g [Populus trichocarpa]
2 Hb_009620_110 0.0404801028 - - -
3 Hb_020375_010 0.0857390422 - - PREDICTED: transcription factor IBH1 [Jatropha curcas]
4 Hb_002073_270 0.0911638549 desease resistance Gene Name: TIR PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
5 Hb_185726_010 0.0915931735 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
6 Hb_009070_020 0.0952741063 - - PREDICTED: uncharacterized protein LOC102612959 [Citrus sinensis]
7 Hb_147006_010 0.0955766551 - - receptor like protein 35 [Arabidopsis thaliana]
8 Hb_004650_120 0.0960357597 - - PREDICTED: auxin transporter-like protein 3 [Jatropha curcas]
9 Hb_138977_010 0.0989686967 - - unnamed protein product [Vitis vinifera]
10 Hb_000749_300 0.1021767321 - - PREDICTED: uncharacterized protein LOC105129180 [Populus euphratica]
11 Hb_077774_010 0.1043600359 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
12 Hb_015934_090 0.1065730546 - - PREDICTED: uncharacterized protein LOC105640158 [Jatropha curcas]
13 Hb_000620_040 0.1084534879 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
14 Hb_001902_040 0.1086584739 - - conserved hypothetical protein [Ricinus communis]
15 Hb_007185_050 0.1095354066 - - hypothetical protein JCGZ_22475 [Jatropha curcas]
16 Hb_002986_030 0.1105017172 - - hypothetical protein JCGZ_12380 [Jatropha curcas]
17 Hb_000009_280 0.111829949 - - Calmodulin, putative [Ricinus communis]
18 Hb_003032_030 0.1145383415 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105639296 isoform X1 [Jatropha curcas]
19 Hb_000077_250 0.1145534146 - - hypothetical protein JCGZ_25802 [Jatropha curcas]
20 Hb_135052_010 0.1152430289 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]

Gene co-expression network

sample Hb_009522_010 Hb_009522_010 Hb_009620_110 Hb_009620_110 Hb_009522_010--Hb_009620_110 Hb_020375_010 Hb_020375_010 Hb_009522_010--Hb_020375_010 Hb_002073_270 Hb_002073_270 Hb_009522_010--Hb_002073_270 Hb_185726_010 Hb_185726_010 Hb_009522_010--Hb_185726_010 Hb_009070_020 Hb_009070_020 Hb_009522_010--Hb_009070_020 Hb_147006_010 Hb_147006_010 Hb_009522_010--Hb_147006_010 Hb_009620_110--Hb_185726_010 Hb_138977_010 Hb_138977_010 Hb_009620_110--Hb_138977_010 Hb_009620_110--Hb_020375_010 Hb_000749_300 Hb_000749_300 Hb_009620_110--Hb_000749_300 Hb_004650_120 Hb_004650_120 Hb_009620_110--Hb_004650_120 Hb_000077_250 Hb_000077_250 Hb_020375_010--Hb_000077_250 Hb_000000_050 Hb_000000_050 Hb_020375_010--Hb_000000_050 Hb_000813_070 Hb_000813_070 Hb_020375_010--Hb_000813_070 Hb_004787_120 Hb_004787_120 Hb_020375_010--Hb_004787_120 Hb_000620_040 Hb_000620_040 Hb_020375_010--Hb_000620_040 Hb_002073_270--Hb_020375_010 Hb_015934_090 Hb_015934_090 Hb_002073_270--Hb_015934_090 Hb_100732_020 Hb_100732_020 Hb_002073_270--Hb_100732_020 Hb_007185_050 Hb_007185_050 Hb_002073_270--Hb_007185_050 Hb_002073_270--Hb_000620_040 Hb_185726_010--Hb_000749_300 Hb_001766_130 Hb_001766_130 Hb_185726_010--Hb_001766_130 Hb_000462_010 Hb_000462_010 Hb_185726_010--Hb_000462_010 Hb_001902_040 Hb_001902_040 Hb_185726_010--Hb_001902_040 Hb_000680_060 Hb_000680_060 Hb_009070_020--Hb_000680_060 Hb_009070_020--Hb_000077_250 Hb_000009_280 Hb_000009_280 Hb_009070_020--Hb_000009_280 Hb_000161_140 Hb_000161_140 Hb_009070_020--Hb_000161_140 Hb_009070_020--Hb_007185_050 Hb_010164_030 Hb_010164_030 Hb_147006_010--Hb_010164_030 Hb_147006_010--Hb_000620_040 Hb_133974_010 Hb_133974_010 Hb_147006_010--Hb_133974_010 Hb_003032_030 Hb_003032_030 Hb_147006_010--Hb_003032_030 Hb_147006_010--Hb_015934_090 Hb_004032_290 Hb_004032_290 Hb_147006_010--Hb_004032_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.550473 0.994292 3.64575 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 2.41072

CAGE analysis