Hb_000680_060

Information

Type -
Description -
Location Contig680: 34600-35370
Sequence    

Annotation

kegg
ID pop:POPTR_0001s20790g
description hypothetical protein
nr
ID XP_006369295.1
description hypothetical protein POPTR_0001s20790g [Populus trichocarpa]
swissprot
ID Q9SJ52
description Protein YLS9 OS=Arabidopsis thaliana GN=YLS9 PE=2 SV=1
trembl
ID B9N188
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s20790g PE=4 SV=1
Gene Ontology
ID GO:0005886
description protein yls9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000680_060 0.0 - - hypothetical protein POPTR_0001s20790g [Populus trichocarpa]
2 Hb_000230_410 0.0793320492 - - PREDICTED: uncharacterized protein LOC105631891 [Jatropha curcas]
3 Hb_001136_040 0.0795013985 - - amino acid transporter, putative [Ricinus communis]
4 Hb_002874_200 0.0839665667 - - PREDICTED: uncharacterized protein LOC105109832 [Populus euphratica]
5 Hb_000009_280 0.0854802524 - - Calmodulin, putative [Ricinus communis]
6 Hb_007185_050 0.0863641207 - - hypothetical protein JCGZ_22475 [Jatropha curcas]
7 Hb_009070_020 0.0923146929 - - PREDICTED: uncharacterized protein LOC102612959 [Citrus sinensis]
8 Hb_009783_010 0.0955052835 - - PREDICTED: sulfated surface glycoprotein 185-like [Populus euphratica]
9 Hb_011853_020 0.1096153794 - - Gamma-glutamyl-gamma-aminobutyrate hydrolase, putative [Ricinus communis]
10 Hb_000003_370 0.1097425194 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
11 Hb_009785_030 0.110033112 transcription factor TF Family: NAC PREDICTED: NAC transcription factor ONAC010 [Jatropha curcas]
12 Hb_005741_030 0.1114014494 - - PREDICTED: PI-PLC X domain-containing protein At5g67130-like [Jatropha curcas]
13 Hb_005127_050 0.1122665909 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA2-like [Populus euphratica]
14 Hb_009023_010 0.1163993261 - - glycosyl hydrolase family 31 family protein [Populus trichocarpa]
15 Hb_003032_110 0.1172110529 - - -
16 Hb_004032_290 0.1183151705 - - protein binding protein, putative [Ricinus communis]
17 Hb_096027_010 0.1187282901 - - ankyrin repeat-containing protein, putative [Ricinus communis]
18 Hb_001136_160 0.118743934 - - catalytic, putative [Ricinus communis]
19 Hb_036520_030 0.1192999539 - - PREDICTED: uncharacterized protein LOC105638098 [Jatropha curcas]
20 Hb_004650_120 0.1201185706 - - PREDICTED: auxin transporter-like protein 3 [Jatropha curcas]

Gene co-expression network

sample Hb_000680_060 Hb_000680_060 Hb_000230_410 Hb_000230_410 Hb_000680_060--Hb_000230_410 Hb_001136_040 Hb_001136_040 Hb_000680_060--Hb_001136_040 Hb_002874_200 Hb_002874_200 Hb_000680_060--Hb_002874_200 Hb_000009_280 Hb_000009_280 Hb_000680_060--Hb_000009_280 Hb_007185_050 Hb_007185_050 Hb_000680_060--Hb_007185_050 Hb_009070_020 Hb_009070_020 Hb_000680_060--Hb_009070_020 Hb_000230_410--Hb_000009_280 Hb_000230_410--Hb_002874_200 Hb_004032_290 Hb_004032_290 Hb_000230_410--Hb_004032_290 Hb_009783_010 Hb_009783_010 Hb_000230_410--Hb_009783_010 Hb_000230_410--Hb_007185_050 Hb_000230_410--Hb_001136_040 Hb_001136_040--Hb_007185_050 Hb_001136_160 Hb_001136_160 Hb_001136_040--Hb_001136_160 Hb_001136_040--Hb_009783_010 Hb_001898_040 Hb_001898_040 Hb_001136_040--Hb_001898_040 Hb_011853_020 Hb_011853_020 Hb_001136_040--Hb_011853_020 Hb_001136_040--Hb_000009_280 Hb_002388_070 Hb_002388_070 Hb_002874_200--Hb_002388_070 Hb_002874_200--Hb_004032_290 Hb_000395_310 Hb_000395_310 Hb_002874_200--Hb_000395_310 Hb_002874_200--Hb_007185_050 Hb_002874_200--Hb_001136_040 Hb_000009_280--Hb_007185_050 Hb_004650_120 Hb_004650_120 Hb_000009_280--Hb_004650_120 Hb_000009_280--Hb_004032_290 Hb_000009_280--Hb_002874_200 Hb_007185_050--Hb_004032_290 Hb_007185_050--Hb_009783_010 Hb_007185_050--Hb_001898_040 Hb_009522_010 Hb_009522_010 Hb_009070_020--Hb_009522_010 Hb_000077_250 Hb_000077_250 Hb_009070_020--Hb_000077_250 Hb_009070_020--Hb_000009_280 Hb_000161_140 Hb_000161_140 Hb_009070_020--Hb_000161_140 Hb_009070_020--Hb_007185_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.14188 9.49936 27.0935 81.8078 0.173277 0.0652681
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.212689 0.222971 0 0.180739 34.7795

CAGE analysis