Hb_009070_020

Information

Type -
Description -
Location Contig9070: 19127-19498
Sequence    

Annotation

kegg
ID cit:102612959
description uncharacterized LOC102612959
nr
ID XP_006474476.1
description PREDICTED: uncharacterized protein LOC102612959 [Citrus sinensis]
swissprot
ID -
description -
trembl
ID F8WLB5
description Putative uncharacterized protein ORF48 OS=Citrus unshiu GN=ORF48 PE=4 SV=1
Gene Ontology
ID GO:0009523
description photosystem ii subunit x

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 010_N10r.ab1: 18855-19593

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009070_020 0.0 - - PREDICTED: uncharacterized protein LOC102612959 [Citrus sinensis]
2 Hb_000680_060 0.0923146929 - - hypothetical protein POPTR_0001s20790g [Populus trichocarpa]
3 Hb_009522_010 0.0952741063 - - hypothetical protein POPTR_0006s18790g [Populus trichocarpa]
4 Hb_000077_250 0.0956558646 - - hypothetical protein JCGZ_25802 [Jatropha curcas]
5 Hb_000009_280 0.0963957065 - - Calmodulin, putative [Ricinus communis]
6 Hb_000161_140 0.0989519578 - - PREDICTED: WEB family protein At3g51220 [Jatropha curcas]
7 Hb_007185_050 0.0995355625 - - hypothetical protein JCGZ_22475 [Jatropha curcas]
8 Hb_000230_410 0.1006959934 - - PREDICTED: uncharacterized protein LOC105631891 [Jatropha curcas]
9 Hb_009620_110 0.1037604581 - - -
10 Hb_001136_040 0.10885366 - - amino acid transporter, putative [Ricinus communis]
11 Hb_004650_120 0.1101346395 - - PREDICTED: auxin transporter-like protein 3 [Jatropha curcas]
12 Hb_000358_060 0.1114630522 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
13 Hb_009783_010 0.1146028717 - - PREDICTED: sulfated surface glycoprotein 185-like [Populus euphratica]
14 Hb_020375_010 0.1162713989 - - PREDICTED: transcription factor IBH1 [Jatropha curcas]
15 Hb_003893_130 0.118781523 - - metal ion binding protein, putative [Ricinus communis]
16 Hb_115572_010 0.1195502068 - - PREDICTED: beta-galactosidase 6 [Jatropha curcas]
17 Hb_002073_270 0.120814285 desease resistance Gene Name: TIR PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
18 Hb_003032_110 0.1215825965 - - -
19 Hb_011381_050 0.1225275426 - - PREDICTED: protein GLUTAMINE DUMPER 5-like [Jatropha curcas]
20 Hb_147006_010 0.1235922327 - - receptor like protein 35 [Arabidopsis thaliana]

Gene co-expression network

sample Hb_009070_020 Hb_009070_020 Hb_000680_060 Hb_000680_060 Hb_009070_020--Hb_000680_060 Hb_009522_010 Hb_009522_010 Hb_009070_020--Hb_009522_010 Hb_000077_250 Hb_000077_250 Hb_009070_020--Hb_000077_250 Hb_000009_280 Hb_000009_280 Hb_009070_020--Hb_000009_280 Hb_000161_140 Hb_000161_140 Hb_009070_020--Hb_000161_140 Hb_007185_050 Hb_007185_050 Hb_009070_020--Hb_007185_050 Hb_000230_410 Hb_000230_410 Hb_000680_060--Hb_000230_410 Hb_001136_040 Hb_001136_040 Hb_000680_060--Hb_001136_040 Hb_002874_200 Hb_002874_200 Hb_000680_060--Hb_002874_200 Hb_000680_060--Hb_000009_280 Hb_000680_060--Hb_007185_050 Hb_009620_110 Hb_009620_110 Hb_009522_010--Hb_009620_110 Hb_020375_010 Hb_020375_010 Hb_009522_010--Hb_020375_010 Hb_002073_270 Hb_002073_270 Hb_009522_010--Hb_002073_270 Hb_185726_010 Hb_185726_010 Hb_009522_010--Hb_185726_010 Hb_147006_010 Hb_147006_010 Hb_009522_010--Hb_147006_010 Hb_002997_150 Hb_002997_150 Hb_000077_250--Hb_002997_150 Hb_000077_250--Hb_020375_010 Hb_004650_120 Hb_004650_120 Hb_000077_250--Hb_004650_120 Hb_000077_250--Hb_007185_050 Hb_004020_030 Hb_004020_030 Hb_000077_250--Hb_004020_030 Hb_000009_280--Hb_000230_410 Hb_000009_280--Hb_007185_050 Hb_000009_280--Hb_004650_120 Hb_000009_280--Hb_001136_040 Hb_004032_290 Hb_004032_290 Hb_000009_280--Hb_004032_290 Hb_000009_280--Hb_002874_200 Hb_005305_040 Hb_005305_040 Hb_000161_140--Hb_005305_040 Hb_001936_120 Hb_001936_120 Hb_000161_140--Hb_001936_120 Hb_005741_030 Hb_005741_030 Hb_000161_140--Hb_005741_030 Hb_000193_180 Hb_000193_180 Hb_000161_140--Hb_000193_180 Hb_039946_060 Hb_039946_060 Hb_000161_140--Hb_039946_060 Hb_007185_050--Hb_001136_040 Hb_007185_050--Hb_004032_290 Hb_007185_050--Hb_002874_200 Hb_009783_010 Hb_009783_010 Hb_007185_050--Hb_009783_010 Hb_001898_040 Hb_001898_040 Hb_007185_050--Hb_001898_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.27915 5.10415 17.8743 0.182659 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.180733 0 0 8.66279

CAGE analysis