Hb_002073_270

Information

Type desease resistance
Description Gene Name: TIR
Location Contig2073: 202635-208627
Sequence    

Annotation

kegg
ID pop:POPTR_0015s04000g
description POPTRDRAFT_574939; hypothetical protein
nr
ID XP_012092458.1
description PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
swissprot
ID Q40392
description TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1
trembl
ID B9IE71
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s04000g PE=4 SV=2
Gene Ontology
ID GO:0032550
description tmv resistance protein n-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21390: 202912-204522 , PASA_asmbl_21392: 205418-206080 , PASA_asmbl_21393: 206552-206907 , PASA_asmbl_21394: 206936-207315 , PASA_asmbl_21395: 208590-208794
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002073_270 0.0 desease resistance Gene Name: TIR PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
2 Hb_009522_010 0.0911638549 - - hypothetical protein POPTR_0006s18790g [Populus trichocarpa]
3 Hb_020375_010 0.0932603237 - - PREDICTED: transcription factor IBH1 [Jatropha curcas]
4 Hb_015934_090 0.095494927 - - PREDICTED: uncharacterized protein LOC105640158 [Jatropha curcas]
5 Hb_100732_020 0.1030593257 - - hypothetical protein POPTR_0001s15930g [Populus trichocarpa]
6 Hb_007185_050 0.1037497286 - - hypothetical protein JCGZ_22475 [Jatropha curcas]
7 Hb_000620_040 0.1046408969 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
8 Hb_009620_110 0.1050177542 - - -
9 Hb_004650_120 0.1058455557 - - PREDICTED: auxin transporter-like protein 3 [Jatropha curcas]
10 Hb_133974_010 0.1061768415 - - PREDICTED: glucan endo-1,3-beta-glucosidase 3-like isoform X2 [Populus euphratica]
11 Hb_147006_010 0.1066761215 - - receptor like protein 35 [Arabidopsis thaliana]
12 Hb_000077_250 0.1094472643 - - hypothetical protein JCGZ_25802 [Jatropha curcas]
13 Hb_003032_030 0.1153650527 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105639296 isoform X1 [Jatropha curcas]
14 Hb_000009_280 0.1185852182 - - Calmodulin, putative [Ricinus communis]
15 Hb_004032_290 0.1189251698 - - protein binding protein, putative [Ricinus communis]
16 Hb_009070_020 0.120814285 - - PREDICTED: uncharacterized protein LOC102612959 [Citrus sinensis]
17 Hb_004785_220 0.1217282076 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.2 [Populus euphratica]
18 Hb_005711_030 0.1220709654 - - hypothetical protein RCOM_0460020 [Ricinus communis]
19 Hb_011381_050 0.1252995308 - - PREDICTED: protein GLUTAMINE DUMPER 5-like [Jatropha curcas]
20 Hb_000000_050 0.1276466232 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002073_270 Hb_002073_270 Hb_009522_010 Hb_009522_010 Hb_002073_270--Hb_009522_010 Hb_020375_010 Hb_020375_010 Hb_002073_270--Hb_020375_010 Hb_015934_090 Hb_015934_090 Hb_002073_270--Hb_015934_090 Hb_100732_020 Hb_100732_020 Hb_002073_270--Hb_100732_020 Hb_007185_050 Hb_007185_050 Hb_002073_270--Hb_007185_050 Hb_000620_040 Hb_000620_040 Hb_002073_270--Hb_000620_040 Hb_009620_110 Hb_009620_110 Hb_009522_010--Hb_009620_110 Hb_009522_010--Hb_020375_010 Hb_185726_010 Hb_185726_010 Hb_009522_010--Hb_185726_010 Hb_009070_020 Hb_009070_020 Hb_009522_010--Hb_009070_020 Hb_147006_010 Hb_147006_010 Hb_009522_010--Hb_147006_010 Hb_000077_250 Hb_000077_250 Hb_020375_010--Hb_000077_250 Hb_000000_050 Hb_000000_050 Hb_020375_010--Hb_000000_050 Hb_000813_070 Hb_000813_070 Hb_020375_010--Hb_000813_070 Hb_004787_120 Hb_004787_120 Hb_020375_010--Hb_004787_120 Hb_020375_010--Hb_000620_040 Hb_015934_090--Hb_000620_040 Hb_003032_030 Hb_003032_030 Hb_015934_090--Hb_003032_030 Hb_000749_300 Hb_000749_300 Hb_015934_090--Hb_000749_300 Hb_015934_090--Hb_147006_010 Hb_163950_050 Hb_163950_050 Hb_015934_090--Hb_163950_050 Hb_002986_030 Hb_002986_030 Hb_015934_090--Hb_002986_030 Hb_011381_050 Hb_011381_050 Hb_100732_020--Hb_011381_050 Hb_100732_020--Hb_007185_050 Hb_100732_020--Hb_000077_250 Hb_115572_010 Hb_115572_010 Hb_100732_020--Hb_115572_010 Hb_100732_020--Hb_009522_010 Hb_001136_040 Hb_001136_040 Hb_007185_050--Hb_001136_040 Hb_000009_280 Hb_000009_280 Hb_007185_050--Hb_000009_280 Hb_004032_290 Hb_004032_290 Hb_007185_050--Hb_004032_290 Hb_002874_200 Hb_002874_200 Hb_007185_050--Hb_002874_200 Hb_009783_010 Hb_009783_010 Hb_007185_050--Hb_009783_010 Hb_001898_040 Hb_001898_040 Hb_007185_050--Hb_001898_040 Hb_000620_040--Hb_003032_030 Hb_000620_040--Hb_147006_010 Hb_003893_130 Hb_003893_130 Hb_000620_040--Hb_003893_130 Hb_010164_030 Hb_010164_030 Hb_000620_040--Hb_010164_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.297511 0.507904 1.94269 0 0.0172667
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0324321 0.0100309 1.12181

CAGE analysis