Hb_100732_020

Information

Type -
Description -
Location Contig100732: 8469-8963
Sequence    

Annotation

kegg
ID pop:POPTR_0001s15930g
description hypothetical protein
nr
ID XP_006369042.1
description hypothetical protein POPTR_0001s15930g [Populus trichocarpa]
swissprot
ID Q9FLC6
description RING-H2 finger protein ATL73 OS=Arabidopsis thaliana GN=ATL73 PE=2 SV=1
trembl
ID U5GT75
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s15930g PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring-h2 finger protein atl74-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_100732_020 0.0 - - hypothetical protein POPTR_0001s15930g [Populus trichocarpa]
2 Hb_002073_270 0.1030593257 desease resistance Gene Name: TIR PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
3 Hb_011381_050 0.105952943 - - PREDICTED: protein GLUTAMINE DUMPER 5-like [Jatropha curcas]
4 Hb_007185_050 0.1071957323 - - hypothetical protein JCGZ_22475 [Jatropha curcas]
5 Hb_000077_250 0.1074426883 - - hypothetical protein JCGZ_25802 [Jatropha curcas]
6 Hb_115572_010 0.1080240222 - - PREDICTED: beta-galactosidase 6 [Jatropha curcas]
7 Hb_009522_010 0.1163908679 - - hypothetical protein POPTR_0006s18790g [Populus trichocarpa]
8 Hb_004020_030 0.1178502514 - - Magnesium and cobalt efflux protein corC, putative [Ricinus communis]
9 Hb_009117_020 0.1196852723 - - RALF-LIKE 32 family protein [Populus trichocarpa]
10 Hb_020375_010 0.1197451681 - - PREDICTED: transcription factor IBH1 [Jatropha curcas]
11 Hb_009070_020 0.1238637778 - - PREDICTED: uncharacterized protein LOC102612959 [Citrus sinensis]
12 Hb_004650_120 0.1247007851 - - PREDICTED: auxin transporter-like protein 3 [Jatropha curcas]
13 Hb_000680_100 0.1263859319 - - WD-repeat protein, putative [Ricinus communis]
14 Hb_001401_120 0.1273675243 - - hypothetical protein JCGZ_04273 [Jatropha curcas]
15 Hb_135052_010 0.1276946806 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
16 Hb_002997_150 0.127829194 - - hypothetical protein RCOM_1406750 [Ricinus communis]
17 Hb_004032_290 0.127925527 - - protein binding protein, putative [Ricinus communis]
18 Hb_003032_110 0.1303227582 - - -
19 Hb_148262_010 0.1303595422 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002874_200 0.1308203937 - - PREDICTED: uncharacterized protein LOC105109832 [Populus euphratica]

Gene co-expression network

sample Hb_100732_020 Hb_100732_020 Hb_002073_270 Hb_002073_270 Hb_100732_020--Hb_002073_270 Hb_011381_050 Hb_011381_050 Hb_100732_020--Hb_011381_050 Hb_007185_050 Hb_007185_050 Hb_100732_020--Hb_007185_050 Hb_000077_250 Hb_000077_250 Hb_100732_020--Hb_000077_250 Hb_115572_010 Hb_115572_010 Hb_100732_020--Hb_115572_010 Hb_009522_010 Hb_009522_010 Hb_100732_020--Hb_009522_010 Hb_002073_270--Hb_009522_010 Hb_020375_010 Hb_020375_010 Hb_002073_270--Hb_020375_010 Hb_015934_090 Hb_015934_090 Hb_002073_270--Hb_015934_090 Hb_002073_270--Hb_007185_050 Hb_000620_040 Hb_000620_040 Hb_002073_270--Hb_000620_040 Hb_011381_050--Hb_115572_010 Hb_002186_110 Hb_002186_110 Hb_011381_050--Hb_002186_110 Hb_009117_020 Hb_009117_020 Hb_011381_050--Hb_009117_020 Hb_001401_120 Hb_001401_120 Hb_011381_050--Hb_001401_120 Hb_036520_030 Hb_036520_030 Hb_011381_050--Hb_036520_030 Hb_000197_260 Hb_000197_260 Hb_011381_050--Hb_000197_260 Hb_001136_040 Hb_001136_040 Hb_007185_050--Hb_001136_040 Hb_000009_280 Hb_000009_280 Hb_007185_050--Hb_000009_280 Hb_004032_290 Hb_004032_290 Hb_007185_050--Hb_004032_290 Hb_002874_200 Hb_002874_200 Hb_007185_050--Hb_002874_200 Hb_009783_010 Hb_009783_010 Hb_007185_050--Hb_009783_010 Hb_001898_040 Hb_001898_040 Hb_007185_050--Hb_001898_040 Hb_002997_150 Hb_002997_150 Hb_000077_250--Hb_002997_150 Hb_000077_250--Hb_020375_010 Hb_004650_120 Hb_004650_120 Hb_000077_250--Hb_004650_120 Hb_000077_250--Hb_007185_050 Hb_004020_030 Hb_004020_030 Hb_000077_250--Hb_004020_030 Hb_009070_020 Hb_009070_020 Hb_000077_250--Hb_009070_020 Hb_115572_010--Hb_009117_020 Hb_000083_200 Hb_000083_200 Hb_115572_010--Hb_000083_200 Hb_001349_040 Hb_001349_040 Hb_115572_010--Hb_001349_040 Hb_115572_010--Hb_002186_110 Hb_115572_010--Hb_001401_120 Hb_009620_110 Hb_009620_110 Hb_009522_010--Hb_009620_110 Hb_009522_010--Hb_020375_010 Hb_185726_010 Hb_185726_010 Hb_009522_010--Hb_185726_010 Hb_009522_010--Hb_009070_020 Hb_147006_010 Hb_147006_010 Hb_009522_010--Hb_147006_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.531426 0.816677 4.09832 0 0.110121
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.79955

CAGE analysis