Hb_163950_050

Information

Type -
Description -
Location Contig163950: 39698-42286
Sequence    

Annotation

kegg
ID rcu:RCOM_1497090
description protein binding protein, putative
nr
ID XP_002510840.1
description protein binding protein, putative [Ricinus communis]
swissprot
ID Q0WUQ1
description BAG family molecular chaperone regulator 1 OS=Arabidopsis thaliana GN=BAG1 PE=1 SV=1
trembl
ID B9R9G5
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_1497090 PE=4 SV=1
Gene Ontology
ID GO:0005739
description bag family molecular chaperone regulator 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15043: 39716-42269
cDNA
(Sanger)
(ID:Location)		 051_C02.ab1: 39717-39953

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_163950_050 0.0 - - protein binding protein, putative [Ricinus communis]
2 Hb_002613_040 0.0776448683 - - phosphate translocator-related family protein [Populus trichocarpa]
3 Hb_015934_090 0.0929581373 - - PREDICTED: uncharacterized protein LOC105640158 [Jatropha curcas]
4 Hb_000103_130 0.0987820007 - - PREDICTED: protein NETWORKED 1A [Jatropha curcas]
5 Hb_002986_030 0.1028981481 - - hypothetical protein JCGZ_12380 [Jatropha curcas]
6 Hb_004032_190 0.1051118068 - - PREDICTED: probable cellulose synthase A catalytic subunit 3 [UDP-forming] isoform X1 [Jatropha curcas]
7 Hb_001206_100 0.1071338684 - - hypothetical protein PRUPE_ppa021915mg, partial [Prunus persica]
8 Hb_000364_090 0.1079799549 - - PREDICTED: filament-like plant protein 7 isoform X2 [Jatropha curcas]
9 Hb_000005_010 0.1105193917 - - PREDICTED: serine carboxypeptidase-like 51 [Jatropha curcas]
10 Hb_001699_080 0.1116333662 - - unnamed protein product [Coffea canephora]
11 Hb_005305_040 0.1120934798 transcription factor TF Family: C3H transcription factor, putative [Ricinus communis]
12 Hb_000749_300 0.1145886957 - - PREDICTED: uncharacterized protein LOC105129180 [Populus euphratica]
13 Hb_000620_040 0.1147639452 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
14 Hb_000083_210 0.1174015041 - - Major facilitator superfamily protein, putative [Theobroma cacao]
15 Hb_005183_100 0.1177601774 - - hypothetical protein CICLE_v10002898mg [Citrus clementina]
16 Hb_000000_050 0.1190218635 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001268_150 0.1199469453 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
18 Hb_133974_010 0.1220830506 - - PREDICTED: glucan endo-1,3-beta-glucosidase 3-like isoform X2 [Populus euphratica]
19 Hb_001289_070 0.1222866249 - - PREDICTED: protein YLS9-like [Jatropha curcas]
20 Hb_147006_010 0.1227527043 - - receptor like protein 35 [Arabidopsis thaliana]

Gene co-expression network

sample Hb_163950_050 Hb_163950_050 Hb_002613_040 Hb_002613_040 Hb_163950_050--Hb_002613_040 Hb_015934_090 Hb_015934_090 Hb_163950_050--Hb_015934_090 Hb_000103_130 Hb_000103_130 Hb_163950_050--Hb_000103_130 Hb_002986_030 Hb_002986_030 Hb_163950_050--Hb_002986_030 Hb_004032_190 Hb_004032_190 Hb_163950_050--Hb_004032_190 Hb_001206_100 Hb_001206_100 Hb_163950_050--Hb_001206_100 Hb_002613_040--Hb_000103_130 Hb_114917_010 Hb_114917_010 Hb_002613_040--Hb_114917_010 Hb_006355_060 Hb_006355_060 Hb_002613_040--Hb_006355_060 Hb_003097_220 Hb_003097_220 Hb_002613_040--Hb_003097_220 Hb_006750_010 Hb_006750_010 Hb_002613_040--Hb_006750_010 Hb_000620_040 Hb_000620_040 Hb_015934_090--Hb_000620_040 Hb_003032_030 Hb_003032_030 Hb_015934_090--Hb_003032_030 Hb_000749_300 Hb_000749_300 Hb_015934_090--Hb_000749_300 Hb_147006_010 Hb_147006_010 Hb_015934_090--Hb_147006_010 Hb_015934_090--Hb_002986_030 Hb_001699_080 Hb_001699_080 Hb_000103_130--Hb_001699_080 Hb_001538_080 Hb_001538_080 Hb_000103_130--Hb_001538_080 Hb_001210_060 Hb_001210_060 Hb_000103_130--Hb_001210_060 Hb_000103_130--Hb_004032_190 Hb_001902_040 Hb_001902_040 Hb_002986_030--Hb_001902_040 Hb_002986_030--Hb_000749_300 Hb_010978_020 Hb_010978_020 Hb_002986_030--Hb_010978_020 Hb_002986_030--Hb_003032_030 Hb_002986_030--Hb_001206_100 Hb_000364_090 Hb_000364_090 Hb_004032_190--Hb_000364_090 Hb_016277_030 Hb_016277_030 Hb_004032_190--Hb_016277_030 Hb_004032_190--Hb_001206_100 Hb_009421_070 Hb_009421_070 Hb_004032_190--Hb_009421_070 Hb_004466_090 Hb_004466_090 Hb_004032_190--Hb_004466_090 Hb_000784_060 Hb_000784_060 Hb_004032_190--Hb_000784_060 Hb_005183_100 Hb_005183_100 Hb_001206_100--Hb_005183_100 Hb_001206_100--Hb_009421_070 Hb_002942_200 Hb_002942_200 Hb_001206_100--Hb_002942_200 Hb_009522_020 Hb_009522_020 Hb_001206_100--Hb_009522_020 Hb_001206_100--Hb_016277_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.28754 25.6808 34.9997 112.326 0.145908 0.107061
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.383112 2.03085 0.723963 6.28121 99.4316

CAGE analysis