Hb_002613_040

Information

Type -
Description -
Location Contig2613: 29334-30326
Sequence    

Annotation

kegg
ID pop:POPTR_0003s11790g
description POPTRDRAFT_646517; phosphate translocator-related family protein
nr
ID XP_002304449.1
description phosphate translocator-related family protein [Populus trichocarpa]
swissprot
ID Q9LDH3
description Probable sugar phosphate/phosphate translocator At1g12500 OS=Arabidopsis thaliana GN=At1g12500 PE=1 SV=1
trembl
ID B9GW30
description Phosphate translocator-related family protein OS=Populus trichocarpa GN=POPTR_0003s11790g PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable sugar phosphate phosphate translocator at1g12500

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002613_040 0.0 - - phosphate translocator-related family protein [Populus trichocarpa]
2 Hb_000103_130 0.0761824555 - - PREDICTED: protein NETWORKED 1A [Jatropha curcas]
3 Hb_163950_050 0.0776448683 - - protein binding protein, putative [Ricinus communis]
4 Hb_114917_010 0.0890293457 - - PREDICTED: thylakoid lumenal 19 kDa protein, chloroplastic [Jatropha curcas]
5 Hb_006355_060 0.0967776959 - - PREDICTED: transcription factor PIF1-like isoform X2 [Jatropha curcas]
6 Hb_003097_220 0.107753509 - - hypothetical protein POPTR_0001s06150g [Populus trichocarpa]
7 Hb_006750_010 0.1204405723 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
8 Hb_001699_080 0.1216300026 - - unnamed protein product [Coffea canephora]
9 Hb_001296_060 0.1261559209 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
10 Hb_002119_110 0.1286075178 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 28 [Jatropha curcas]
11 Hb_003058_170 0.1304501946 - - PREDICTED: F-box protein At2g26850 isoform X1 [Jatropha curcas]
12 Hb_004032_190 0.130642076 - - PREDICTED: probable cellulose synthase A catalytic subunit 3 [UDP-forming] isoform X1 [Jatropha curcas]
13 Hb_001538_080 0.1314923345 - - PREDICTED: QWRF motif-containing protein 2 isoform X2 [Jatropha curcas]
14 Hb_001210_060 0.1321797469 - - PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
15 Hb_001369_390 0.1326105768 - - Glycerol-3-phosphate transporter, putative [Ricinus communis]
16 Hb_000005_010 0.133853372 - - PREDICTED: serine carboxypeptidase-like 51 [Jatropha curcas]
17 Hb_003125_210 0.1341787772 - - Phospholipase C 4 precursor, putative [Ricinus communis]
18 Hb_028396_020 0.134855238 - - PREDICTED: ras-related protein Rab7 [Jatropha curcas]
19 Hb_015934_090 0.1349165148 - - PREDICTED: uncharacterized protein LOC105640158 [Jatropha curcas]
20 Hb_000083_210 0.1350539097 - - Major facilitator superfamily protein, putative [Theobroma cacao]

Gene co-expression network

sample Hb_002613_040 Hb_002613_040 Hb_000103_130 Hb_000103_130 Hb_002613_040--Hb_000103_130 Hb_163950_050 Hb_163950_050 Hb_002613_040--Hb_163950_050 Hb_114917_010 Hb_114917_010 Hb_002613_040--Hb_114917_010 Hb_006355_060 Hb_006355_060 Hb_002613_040--Hb_006355_060 Hb_003097_220 Hb_003097_220 Hb_002613_040--Hb_003097_220 Hb_006750_010 Hb_006750_010 Hb_002613_040--Hb_006750_010 Hb_001699_080 Hb_001699_080 Hb_000103_130--Hb_001699_080 Hb_001538_080 Hb_001538_080 Hb_000103_130--Hb_001538_080 Hb_001210_060 Hb_001210_060 Hb_000103_130--Hb_001210_060 Hb_000103_130--Hb_163950_050 Hb_004032_190 Hb_004032_190 Hb_000103_130--Hb_004032_190 Hb_015934_090 Hb_015934_090 Hb_163950_050--Hb_015934_090 Hb_002986_030 Hb_002986_030 Hb_163950_050--Hb_002986_030 Hb_163950_050--Hb_004032_190 Hb_001206_100 Hb_001206_100 Hb_163950_050--Hb_001206_100 Hb_114917_010--Hb_003097_220 Hb_003058_170 Hb_003058_170 Hb_114917_010--Hb_003058_170 Hb_020378_020 Hb_020378_020 Hb_114917_010--Hb_020378_020 Hb_028396_020 Hb_028396_020 Hb_114917_010--Hb_028396_020 Hb_001916_150 Hb_001916_150 Hb_114917_010--Hb_001916_150 Hb_006355_060--Hb_003097_220 Hb_003147_040 Hb_003147_040 Hb_006355_060--Hb_003147_040 Hb_001232_040 Hb_001232_040 Hb_006355_060--Hb_001232_040 Hb_006355_060--Hb_163950_050 Hb_058471_010 Hb_058471_010 Hb_006355_060--Hb_058471_010 Hb_012239_060 Hb_012239_060 Hb_003097_220--Hb_012239_060 Hb_005057_030 Hb_005057_030 Hb_003097_220--Hb_005057_030 Hb_005725_160 Hb_005725_160 Hb_003097_220--Hb_005725_160 Hb_003462_040 Hb_003462_040 Hb_006750_010--Hb_003462_040 Hb_006750_010--Hb_028396_020 Hb_001369_010 Hb_001369_010 Hb_006750_010--Hb_001369_010 Hb_000820_110 Hb_000820_110 Hb_006750_010--Hb_000820_110 Hb_001195_380 Hb_001195_380 Hb_006750_010--Hb_001195_380 Hb_019516_060 Hb_019516_060 Hb_006750_010--Hb_019516_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.463135 7.75676 11.8189 32.8458 0.0433094 0.261759
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.715706 0.683517 1.03561 2.71686 33.2958

CAGE analysis