Hb_058471_010

Information

Type -
Description -
Location Contig58471: 10181-12953
Sequence    

Annotation

kegg
ID rcu:RCOM_1175470
description hypothetical protein
nr
ID XP_012088305.1
description PREDICTED: clathrin light chain 1 [Jatropha curcas]
swissprot
ID Q9SKU1
description Clathrin light chain 1 OS=Arabidopsis thaliana GN=At2g20760 PE=2 SV=1
trembl
ID B9RW21
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1175470 PE=4 SV=1
Gene Ontology
ID GO:0030130
description clathrin light chain 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49961: 10381-12161
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_058471_010 0.0 - - PREDICTED: clathrin light chain 1 [Jatropha curcas]
2 Hb_006355_060 0.1322081909 - - PREDICTED: transcription factor PIF1-like isoform X2 [Jatropha curcas]
3 Hb_001366_300 0.1332150667 - - GERMIN-LIKE protein 10 [Populus trichocarpa]
4 Hb_000000_050 0.137175824 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001232_040 0.1372670922 - - PREDICTED: uncharacterized protein LOC105634974 [Jatropha curcas]
6 Hb_005305_040 0.1373581667 transcription factor TF Family: C3H transcription factor, putative [Ricinus communis]
7 Hb_163950_050 0.1375840744 - - protein binding protein, putative [Ricinus communis]
8 Hb_015934_090 0.1409486525 - - PREDICTED: uncharacterized protein LOC105640158 [Jatropha curcas]
9 Hb_002073_270 0.1442283704 desease resistance Gene Name: TIR PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
10 Hb_001950_100 0.1460523828 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g37250 [Jatropha curcas]
11 Hb_002043_070 0.1475111253 - - PREDICTED: jacalin-related lectin 19 [Jatropha curcas]
12 Hb_002835_070 0.1519017632 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000928_200 0.1523828868 - - PREDICTED: RING-H2 finger protein ATL52-like [Jatropha curcas]
14 Hb_001541_210 0.1533402804 - - hypothetical protein POPTR_0008s19020g [Populus trichocarpa]
15 Hb_000000_260 0.1552705471 - - PREDICTED: probable galacturonosyltransferase-like 1 [Jatropha curcas]
16 Hb_002613_040 0.1570033569 - - phosphate translocator-related family protein [Populus trichocarpa]
17 Hb_000983_130 0.1570450698 - - transcription factor, putative [Ricinus communis]
18 Hb_152277_010 0.1571259231 - - PREDICTED: 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like [Jatropha curcas]
19 Hb_077774_010 0.1578704147 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
20 Hb_000856_030 0.1580322253 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_058471_010 Hb_058471_010 Hb_006355_060 Hb_006355_060 Hb_058471_010--Hb_006355_060 Hb_001366_300 Hb_001366_300 Hb_058471_010--Hb_001366_300 Hb_000000_050 Hb_000000_050 Hb_058471_010--Hb_000000_050 Hb_001232_040 Hb_001232_040 Hb_058471_010--Hb_001232_040 Hb_005305_040 Hb_005305_040 Hb_058471_010--Hb_005305_040 Hb_163950_050 Hb_163950_050 Hb_058471_010--Hb_163950_050 Hb_003097_220 Hb_003097_220 Hb_006355_060--Hb_003097_220 Hb_002613_040 Hb_002613_040 Hb_006355_060--Hb_002613_040 Hb_003147_040 Hb_003147_040 Hb_006355_060--Hb_003147_040 Hb_006355_060--Hb_001232_040 Hb_006355_060--Hb_163950_050 Hb_077774_010 Hb_077774_010 Hb_001366_300--Hb_077774_010 Hb_007579_030 Hb_007579_030 Hb_001366_300--Hb_007579_030 Hb_026124_020 Hb_026124_020 Hb_001366_300--Hb_026124_020 Hb_001401_120 Hb_001401_120 Hb_001366_300--Hb_001401_120 Hb_148262_010 Hb_148262_010 Hb_001366_300--Hb_148262_010 Hb_000983_130 Hb_000983_130 Hb_001366_300--Hb_000983_130 Hb_020375_010 Hb_020375_010 Hb_000000_050--Hb_020375_010 Hb_002894_080 Hb_002894_080 Hb_000000_050--Hb_002894_080 Hb_001279_400 Hb_001279_400 Hb_000000_050--Hb_001279_400 Hb_000620_040 Hb_000620_040 Hb_000000_050--Hb_000620_040 Hb_015934_090 Hb_015934_090 Hb_000000_050--Hb_015934_090 Hb_003032_030 Hb_003032_030 Hb_000000_050--Hb_003032_030 Hb_001158_250 Hb_001158_250 Hb_001232_040--Hb_001158_250 Hb_000622_030 Hb_000622_030 Hb_001232_040--Hb_000622_030 Hb_000271_130 Hb_000271_130 Hb_001232_040--Hb_000271_130 Hb_000000_290 Hb_000000_290 Hb_001232_040--Hb_000000_290 Hb_001950_100 Hb_001950_100 Hb_001232_040--Hb_001950_100 Hb_005723_090 Hb_005723_090 Hb_001232_040--Hb_005723_090 Hb_000161_140 Hb_000161_140 Hb_005305_040--Hb_000161_140 Hb_001936_120 Hb_001936_120 Hb_005305_040--Hb_001936_120 Hb_000928_200 Hb_000928_200 Hb_005305_040--Hb_000928_200 Hb_002759_030 Hb_002759_030 Hb_005305_040--Hb_002759_030 Hb_000457_120 Hb_000457_120 Hb_005305_040--Hb_000457_120 Hb_005305_040--Hb_163950_050 Hb_163950_050--Hb_002613_040 Hb_163950_050--Hb_015934_090 Hb_000103_130 Hb_000103_130 Hb_163950_050--Hb_000103_130 Hb_002986_030 Hb_002986_030 Hb_163950_050--Hb_002986_030 Hb_004032_190 Hb_004032_190 Hb_163950_050--Hb_004032_190 Hb_001206_100 Hb_001206_100 Hb_163950_050--Hb_001206_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0615238 0.683764 0.491167 2.39111 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.110317 0.0709601 1.59593

CAGE analysis