Hb_000161_140

Information

Type -
Description -
Location Contig161: 151234-151968
Sequence    

Annotation

kegg
ID pop:POPTR_0022s00780g
description hypothetical protein
nr
ID XP_012066648.1
description PREDICTED: WEB family protein At3g51220 [Jatropha curcas]
swissprot
ID F4I0N3
description WEB family protein At1g75720 OS=Arabidopsis thaliana GN=At1g75720 PE=2 SV=1
trembl
ID A0A067L1S5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00218 PE=4 SV=1
Gene Ontology
ID GO:0045491
description web family protein at3g51220

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14430: 151791-151960
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000161_140 0.0 - - PREDICTED: WEB family protein At3g51220 [Jatropha curcas]
2 Hb_005305_040 0.0923889347 transcription factor TF Family: C3H transcription factor, putative [Ricinus communis]
3 Hb_009070_020 0.0989519578 - - PREDICTED: uncharacterized protein LOC102612959 [Citrus sinensis]
4 Hb_001936_120 0.108047356 - - PREDICTED: uncharacterized protein LOC105644623 isoform X1 [Jatropha curcas]
5 Hb_005741_030 0.114445105 - - PREDICTED: PI-PLC X domain-containing protein At5g67130-like [Jatropha curcas]
6 Hb_000193_180 0.1207527436 transcription factor TF Family: MYB PREDICTED: transcription factor MYB28-like [Jatropha curcas]
7 Hb_039946_060 0.124991904 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor TINY-like [Jatropha curcas]
8 Hb_003893_130 0.1250797043 - - metal ion binding protein, putative [Ricinus communis]
9 Hb_000000_260 0.1254153181 - - PREDICTED: probable galacturonosyltransferase-like 1 [Jatropha curcas]
10 Hb_001541_210 0.1267492456 - - hypothetical protein POPTR_0008s19020g [Populus trichocarpa]
11 Hb_015934_090 0.1282686485 - - PREDICTED: uncharacterized protein LOC105640158 [Jatropha curcas]
12 Hb_000680_060 0.1291700799 - - hypothetical protein POPTR_0001s20790g [Populus trichocarpa]
13 Hb_036520_030 0.1304106052 - - PREDICTED: uncharacterized protein LOC105638098 [Jatropha curcas]
14 Hb_000620_040 0.1309675764 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
15 Hb_009522_010 0.1321610293 - - hypothetical protein POPTR_0006s18790g [Populus trichocarpa]
16 Hb_147006_010 0.132270856 - - receptor like protein 35 [Arabidopsis thaliana]
17 Hb_011381_050 0.1324916333 - - PREDICTED: protein GLUTAMINE DUMPER 5-like [Jatropha curcas]
18 Hb_029791_010 0.1324938415 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
19 Hb_000230_410 0.1361275796 - - PREDICTED: uncharacterized protein LOC105631891 [Jatropha curcas]
20 Hb_103225_030 0.1373429414 transcription factor TF Family: Orphans DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000161_140 Hb_000161_140 Hb_005305_040 Hb_005305_040 Hb_000161_140--Hb_005305_040 Hb_009070_020 Hb_009070_020 Hb_000161_140--Hb_009070_020 Hb_001936_120 Hb_001936_120 Hb_000161_140--Hb_001936_120 Hb_005741_030 Hb_005741_030 Hb_000161_140--Hb_005741_030 Hb_000193_180 Hb_000193_180 Hb_000161_140--Hb_000193_180 Hb_039946_060 Hb_039946_060 Hb_000161_140--Hb_039946_060 Hb_005305_040--Hb_001936_120 Hb_000928_200 Hb_000928_200 Hb_005305_040--Hb_000928_200 Hb_002759_030 Hb_002759_030 Hb_005305_040--Hb_002759_030 Hb_000457_120 Hb_000457_120 Hb_005305_040--Hb_000457_120 Hb_163950_050 Hb_163950_050 Hb_005305_040--Hb_163950_050 Hb_000680_060 Hb_000680_060 Hb_009070_020--Hb_000680_060 Hb_009522_010 Hb_009522_010 Hb_009070_020--Hb_009522_010 Hb_000077_250 Hb_000077_250 Hb_009070_020--Hb_000077_250 Hb_000009_280 Hb_000009_280 Hb_009070_020--Hb_000009_280 Hb_007185_050 Hb_007185_050 Hb_009070_020--Hb_007185_050 Hb_029791_010 Hb_029791_010 Hb_001936_120--Hb_029791_010 Hb_036520_030 Hb_036520_030 Hb_001936_120--Hb_036520_030 Hb_000358_060 Hb_000358_060 Hb_001936_120--Hb_000358_060 Hb_011381_050 Hb_011381_050 Hb_001936_120--Hb_011381_050 Hb_002388_070 Hb_002388_070 Hb_001936_120--Hb_002388_070 Hb_103225_030 Hb_103225_030 Hb_005741_030--Hb_103225_030 Hb_001408_080 Hb_001408_080 Hb_005741_030--Hb_001408_080 Hb_001427_100 Hb_001427_100 Hb_005741_030--Hb_001427_100 Hb_005741_030--Hb_036520_030 Hb_001541_210 Hb_001541_210 Hb_005741_030--Hb_001541_210 Hb_005741_030--Hb_039946_060 Hb_001766_130 Hb_001766_130 Hb_000193_180--Hb_001766_130 Hb_003893_130 Hb_003893_130 Hb_000193_180--Hb_003893_130 Hb_096027_010 Hb_096027_010 Hb_000193_180--Hb_096027_010 Hb_005675_070 Hb_005675_070 Hb_000193_180--Hb_005675_070 Hb_000193_180--Hb_039946_060 Hb_161103_010 Hb_161103_010 Hb_000193_180--Hb_161103_010 Hb_039946_060--Hb_001427_100 Hb_001405_170 Hb_001405_170 Hb_039946_060--Hb_001405_170 Hb_000020_210 Hb_000020_210 Hb_039946_060--Hb_000020_210 Hb_000012_350 Hb_000012_350 Hb_039946_060--Hb_000012_350 Hb_003054_070 Hb_003054_070 Hb_039946_060--Hb_003054_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 4.89994 6.07519 22.4971 0.092336 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.226923 0.65416 0 0.0965879 11.2386

CAGE analysis