Hb_001405_170

Information

Type -
Description -
Location Contig1405: 206313-207632
Sequence    

Annotation

kegg
ID pop:POPTR_0004s08340g
description POPTRDRAFT_555992; aspartyl protease family protein
nr
ID XP_002305886.2
description aspartyl protease family protein [Populus trichocarpa]
swissprot
ID Q9LZL3
description Aspartic proteinase PCS1 OS=Arabidopsis thaliana GN=PCS1 PE=2 SV=1
trembl
ID B9H3C4
description Aspartyl protease family protein OS=Populus trichocarpa GN=POPTR_0004s08340g PE=3 SV=2
Gene Ontology
ID GO:0004190
description aspartic proteinase pcs1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001405_170 0.0 - - aspartyl protease family protein [Populus trichocarpa]
2 Hb_002053_190 0.0638507722 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105639296 isoform X1 [Jatropha curcas]
3 Hb_002960_030 0.0658026899 - - hypothetical protein POPTR_0002s02190g [Populus trichocarpa]
4 Hb_081864_010 0.0834235682 - - ankyrin repeat-containing protein, putative [Ricinus communis]
5 Hb_001541_210 0.0856002438 - - hypothetical protein POPTR_0008s19020g [Populus trichocarpa]
6 Hb_009771_040 0.0860964034 - - hypothetical protein JCGZ_25039 [Jatropha curcas]
7 Hb_002168_070 0.0914745769 - - Jasmonate O-methyltransferase, putative [Ricinus communis]
8 Hb_002043_070 0.0921184549 - - PREDICTED: jacalin-related lectin 19 [Jatropha curcas]
9 Hb_039946_060 0.0927073378 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor TINY-like [Jatropha curcas]
10 Hb_000020_210 0.093241315 - - hypothetical protein JCGZ_17348 [Jatropha curcas]
11 Hb_009222_040 0.0952253964 transcription factor TF Family: C2C2-Dof DNA binding with one finger 2.4, putative [Theobroma cacao]
12 Hb_017862_030 0.0963182978 - - PREDICTED: proteasome assembly chaperone 4 [Jatropha curcas]
13 Hb_002890_330 0.0984073005 - - caspase, putative [Ricinus communis]
14 Hb_001427_100 0.10104101 - - acc synthase, putative [Ricinus communis]
15 Hb_005741_030 0.1084598438 - - PREDICTED: PI-PLC X domain-containing protein At5g67130-like [Jatropha curcas]
16 Hb_010174_200 0.1090472391 - - PREDICTED: uncharacterized protein LOC105644743 isoform X1 [Jatropha curcas]
17 Hb_002534_070 0.1091121248 - - PREDICTED: uncharacterized protein LOC105640545 [Jatropha curcas]
18 Hb_029791_010 0.110012789 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
19 Hb_000983_130 0.1119477028 - - transcription factor, putative [Ricinus communis]
20 Hb_000434_060 0.1130241893 desease resistance Gene Name: hmm Disease resistance protein RPM1, putative [Ricinus communis]

Gene co-expression network

sample Hb_001405_170 Hb_001405_170 Hb_002053_190 Hb_002053_190 Hb_001405_170--Hb_002053_190 Hb_002960_030 Hb_002960_030 Hb_001405_170--Hb_002960_030 Hb_081864_010 Hb_081864_010 Hb_001405_170--Hb_081864_010 Hb_001541_210 Hb_001541_210 Hb_001405_170--Hb_001541_210 Hb_009771_040 Hb_009771_040 Hb_001405_170--Hb_009771_040 Hb_002168_070 Hb_002168_070 Hb_001405_170--Hb_002168_070 Hb_002890_330 Hb_002890_330 Hb_002053_190--Hb_002890_330 Hb_002043_070 Hb_002043_070 Hb_002053_190--Hb_002043_070 Hb_002053_190--Hb_002960_030 Hb_002053_190--Hb_002168_070 Hb_002053_190--Hb_001541_210 Hb_002534_070 Hb_002534_070 Hb_002960_030--Hb_002534_070 Hb_000983_130 Hb_000983_130 Hb_002960_030--Hb_000983_130 Hb_002960_030--Hb_001541_210 Hb_002960_030--Hb_002890_330 Hb_010174_200 Hb_010174_200 Hb_081864_010--Hb_010174_200 Hb_081864_010--Hb_002960_030 Hb_081864_010--Hb_002053_190 Hb_002762_100 Hb_002762_100 Hb_081864_010--Hb_002762_100 Hb_000020_210 Hb_000020_210 Hb_081864_010--Hb_000020_210 Hb_001541_210--Hb_002890_330 Hb_005741_030 Hb_005741_030 Hb_001541_210--Hb_005741_030 Hb_001541_210--Hb_002043_070 Hb_009771_040--Hb_002168_070 Hb_026050_010 Hb_026050_010 Hb_009771_040--Hb_026050_010 Hb_002250_140 Hb_002250_140 Hb_009771_040--Hb_002250_140 Hb_000258_230 Hb_000258_230 Hb_009771_040--Hb_000258_230 Hb_000434_060 Hb_000434_060 Hb_009771_040--Hb_000434_060 Hb_173107_020 Hb_173107_020 Hb_009771_040--Hb_173107_020 Hb_002168_070--Hb_002043_070 Hb_002168_070--Hb_000434_060 Hb_005211_210 Hb_005211_210 Hb_002168_070--Hb_005211_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0317674 22.2263 17.5779 54.818 0.168871 0.0163073
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0724698 0.285048 0.106541 2.23436 25.3161

CAGE analysis