Hb_002534_070

Information

Type -
Description -
Location Contig2534: 48979-49742
Sequence    

Annotation

kegg
ID rcu:RCOM_1471750
description hypothetical protein
nr
ID XP_012080277.1
description PREDICTED: uncharacterized protein LOC105640545 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K4Y1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11637 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26492: 48986-49706
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002534_070 0.0 - - PREDICTED: uncharacterized protein LOC105640545 [Jatropha curcas]
2 Hb_003023_030 0.0641694503 - - PREDICTED: MATE efflux family protein 5-like isoform X1 [Citrus sinensis]
3 Hb_002960_030 0.0735091906 - - hypothetical protein POPTR_0002s02190g [Populus trichocarpa]
4 Hb_004450_090 0.0809660997 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
5 Hb_103225_030 0.0884560589 transcription factor TF Family: Orphans DNA binding protein, putative [Ricinus communis]
6 Hb_000646_040 0.0926737052 - - PREDICTED: thiamine-repressible mitochondrial transport protein THI74-like [Jatropha curcas]
7 Hb_080601_010 0.0974645948 - - metallothionein 3-like protein [Hevea brasiliensis]
8 Hb_128216_010 0.098688996 - - PREDICTED: UDP-glycosyltransferase 79B6-like [Jatropha curcas]
9 Hb_000020_210 0.0996677169 - - hypothetical protein JCGZ_17348 [Jatropha curcas]
10 Hb_000000_260 0.1061499189 - - PREDICTED: probable galacturonosyltransferase-like 1 [Jatropha curcas]
11 Hb_003582_030 0.1061584168 - - PREDICTED: serine/threonine-protein kinase BRI1-like 2 [Jatropha curcas]
12 Hb_002170_010 0.1075525838 - - hypothetical protein JCGZ_25046 [Jatropha curcas]
13 Hb_002186_110 0.1086939748 - - hypothetical protein CICLE_v10024045mg, partial [Citrus clementina]
14 Hb_001405_170 0.1091121248 - - aspartyl protease family protein [Populus trichocarpa]
15 Hb_005741_030 0.1094835708 - - PREDICTED: PI-PLC X domain-containing protein At5g67130-like [Jatropha curcas]
16 Hb_000983_130 0.109774541 - - transcription factor, putative [Ricinus communis]
17 Hb_009222_040 0.1098235561 transcription factor TF Family: C2C2-Dof DNA binding with one finger 2.4, putative [Theobroma cacao]
18 Hb_002890_330 0.1151669528 - - caspase, putative [Ricinus communis]
19 Hb_017700_030 0.1152749511 - - PREDICTED: vacuolar amino acid transporter 1 [Jatropha curcas]
20 Hb_002053_190 0.1156098417 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105639296 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002534_070 Hb_002534_070 Hb_003023_030 Hb_003023_030 Hb_002534_070--Hb_003023_030 Hb_002960_030 Hb_002960_030 Hb_002534_070--Hb_002960_030 Hb_004450_090 Hb_004450_090 Hb_002534_070--Hb_004450_090 Hb_103225_030 Hb_103225_030 Hb_002534_070--Hb_103225_030 Hb_000646_040 Hb_000646_040 Hb_002534_070--Hb_000646_040 Hb_080601_010 Hb_080601_010 Hb_002534_070--Hb_080601_010 Hb_003023_030--Hb_103225_030 Hb_000120_560 Hb_000120_560 Hb_003023_030--Hb_000120_560 Hb_003023_030--Hb_002960_030 Hb_128216_010 Hb_128216_010 Hb_003023_030--Hb_128216_010 Hb_003023_030--Hb_000646_040 Hb_002053_190 Hb_002053_190 Hb_002960_030--Hb_002053_190 Hb_001405_170 Hb_001405_170 Hb_002960_030--Hb_001405_170 Hb_000983_130 Hb_000983_130 Hb_002960_030--Hb_000983_130 Hb_001541_210 Hb_001541_210 Hb_002960_030--Hb_001541_210 Hb_002890_330 Hb_002890_330 Hb_002960_030--Hb_002890_330 Hb_004450_090--Hb_000983_130 Hb_061783_010 Hb_061783_010 Hb_004450_090--Hb_061783_010 Hb_004102_200 Hb_004102_200 Hb_004450_090--Hb_004102_200 Hb_029238_040 Hb_029238_040 Hb_004450_090--Hb_029238_040 Hb_000000_260 Hb_000000_260 Hb_004450_090--Hb_000000_260 Hb_005741_030 Hb_005741_030 Hb_103225_030--Hb_005741_030 Hb_001408_080 Hb_001408_080 Hb_103225_030--Hb_001408_080 Hb_002762_100 Hb_002762_100 Hb_103225_030--Hb_002762_100 Hb_000849_030 Hb_000849_030 Hb_103225_030--Hb_000849_030 Hb_000646_040--Hb_000120_560 Hb_003582_030 Hb_003582_030 Hb_000646_040--Hb_003582_030 Hb_007919_010 Hb_007919_010 Hb_000646_040--Hb_007919_010 Hb_002186_170 Hb_002186_170 Hb_000646_040--Hb_002186_170 Hb_000422_060 Hb_000422_060 Hb_000646_040--Hb_000422_060 Hb_080601_010--Hb_003023_030 Hb_000030_230 Hb_000030_230 Hb_080601_010--Hb_000030_230 Hb_080601_010--Hb_004450_090 Hb_080601_010--Hb_002186_170 Hb_080601_010--Hb_000000_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.211334 25.5148 13.7774 68.414 0.265411 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.944374 19.598

CAGE analysis