Hb_000646_040

Information

Type -
Description -
Location Contig646: 152824-156344
Sequence    

Annotation

kegg
ID rcu:RCOM_0003520
description hypothetical protein
nr
ID XP_012081165.1
description PREDICTED: thiamine-repressible mitochondrial transport protein THI74-like [Jatropha curcas]
swissprot
ID A6QL92
description Solute carrier family 35 member F5 OS=Bos taurus GN=SLC35F5 PE=2 SV=1
trembl
ID A0A067KEI5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17011 PE=4 SV=1
Gene Ontology
ID GO:0016021
description uncharacterized vacuolar membrane protein yml018c-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52335: 153222-154606 , PASA_asmbl_52336: 155100-156356
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000646_040 0.0 - - PREDICTED: thiamine-repressible mitochondrial transport protein THI74-like [Jatropha curcas]
2 Hb_000120_560 0.0740263225 - - protein with unknown function [Ricinus communis]
3 Hb_003582_030 0.0828736428 - - PREDICTED: serine/threonine-protein kinase BRI1-like 2 [Jatropha curcas]
4 Hb_002534_070 0.0926737052 - - PREDICTED: uncharacterized protein LOC105640545 [Jatropha curcas]
5 Hb_007919_010 0.0939867832 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002186_170 0.096308569 - - hypothetical protein POPTR_0067s00200g [Populus trichocarpa]
7 Hb_000422_060 0.0968675503 transcription factor TF Family: OFP hypothetical protein RCOM_1282480 [Ricinus communis]
8 Hb_000098_230 0.0972927259 - - Potassium channel AKT2/3, putative [Ricinus communis]
9 Hb_003023_030 0.0996025619 - - PREDICTED: MATE efflux family protein 5-like isoform X1 [Citrus sinensis]
10 Hb_000175_370 0.1075766262 - - hypothetical protein EUGRSUZ_F03862 [Eucalyptus grandis]
11 Hb_000030_230 0.1094858124 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
12 Hb_120040_010 0.1169799235 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
13 Hb_002186_110 0.1174618624 - - hypothetical protein CICLE_v10024045mg, partial [Citrus clementina]
14 Hb_002053_020 0.1186591393 - - PREDICTED: MATE efflux family protein DTX1 [Jatropha curcas]
15 Hb_128216_010 0.1198304026 - - PREDICTED: UDP-glycosyltransferase 79B6-like [Jatropha curcas]
16 Hb_000614_120 0.1201265713 - - hypothetical protein JCGZ_17923 [Jatropha curcas]
17 Hb_001856_130 0.1202326429 - - hypothetical protein CISIN_1g022795mg [Citrus sinensis]
18 Hb_004450_090 0.1215185788 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
19 Hb_103225_030 0.1227526176 transcription factor TF Family: Orphans DNA binding protein, putative [Ricinus communis]
20 Hb_001417_090 0.122795298 - - PREDICTED: uncharacterized protein LOC105650625 [Jatropha curcas]

Gene co-expression network

sample Hb_000646_040 Hb_000646_040 Hb_000120_560 Hb_000120_560 Hb_000646_040--Hb_000120_560 Hb_003582_030 Hb_003582_030 Hb_000646_040--Hb_003582_030 Hb_002534_070 Hb_002534_070 Hb_000646_040--Hb_002534_070 Hb_007919_010 Hb_007919_010 Hb_000646_040--Hb_007919_010 Hb_002186_170 Hb_002186_170 Hb_000646_040--Hb_002186_170 Hb_000422_060 Hb_000422_060 Hb_000646_040--Hb_000422_060 Hb_000614_120 Hb_000614_120 Hb_000120_560--Hb_000614_120 Hb_003023_030 Hb_003023_030 Hb_000120_560--Hb_003023_030 Hb_000175_370 Hb_000175_370 Hb_000120_560--Hb_000175_370 Hb_000139_390 Hb_000139_390 Hb_000120_560--Hb_000139_390 Hb_000120_560--Hb_002186_170 Hb_000098_230 Hb_000098_230 Hb_003582_030--Hb_000098_230 Hb_000087_190 Hb_000087_190 Hb_003582_030--Hb_000087_190 Hb_000030_230 Hb_000030_230 Hb_003582_030--Hb_000030_230 Hb_003582_030--Hb_002186_170 Hb_000197_260 Hb_000197_260 Hb_003582_030--Hb_000197_260 Hb_002534_070--Hb_003023_030 Hb_002960_030 Hb_002960_030 Hb_002534_070--Hb_002960_030 Hb_004450_090 Hb_004450_090 Hb_002534_070--Hb_004450_090 Hb_103225_030 Hb_103225_030 Hb_002534_070--Hb_103225_030 Hb_080601_010 Hb_080601_010 Hb_002534_070--Hb_080601_010 Hb_180088_010 Hb_180088_010 Hb_007919_010--Hb_180088_010 Hb_007919_010--Hb_000098_230 Hb_006351_050 Hb_006351_050 Hb_007919_010--Hb_006351_050 Hb_007919_010--Hb_000422_060 Hb_001500_020 Hb_001500_020 Hb_007919_010--Hb_001500_020 Hb_001579_160 Hb_001579_160 Hb_007919_010--Hb_001579_160 Hb_002186_170--Hb_000175_370 Hb_002186_170--Hb_000098_230 Hb_002186_170--Hb_000422_060 Hb_001541_170 Hb_001541_170 Hb_002186_170--Hb_001541_170 Hb_032299_020 Hb_032299_020 Hb_000422_060--Hb_032299_020 Hb_000349_280 Hb_000349_280 Hb_000422_060--Hb_000349_280 Hb_000422_060--Hb_000098_230 Hb_001584_250 Hb_001584_250 Hb_000422_060--Hb_001584_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0181935 3.09384 1.74402 11.0989 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0326953 0 0.209638 1.89244

CAGE analysis