Hb_000139_390

Information

Type -
Description -
Location Contig139: 402805-403026
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0016829
description atp-dependent -nad h-hydrate dehydratase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10669: 402978-403789
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000139_390 0.0 - - -
2 Hb_004112_070 0.0755327441 - - -
3 Hb_004474_070 0.08615658 desease resistance Gene Name: NB-ARC Disease resistance protein RPP8, putative [Ricinus communis]
4 Hb_001953_010 0.0910475164 - - PREDICTED: bidirectional sugar transporter SWEET10-like [Jatropha curcas]
5 Hb_000175_370 0.0938684112 - - hypothetical protein EUGRSUZ_F03862 [Eucalyptus grandis]
6 Hb_000120_560 0.0953515601 - - protein with unknown function [Ricinus communis]
7 Hb_000684_110 0.096642748 - - hypothetical protein POPTR_0006s13250g [Populus trichocarpa]
8 Hb_000000_320 0.1006241653 - - PREDICTED: calcium uniporter protein 4, mitochondrial [Jatropha curcas]
9 Hb_001675_350 0.1067914289 - - Avr9/Cf-9 rapidly elicited protein [Jatropha curcas]
10 Hb_002303_050 0.1139011869 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor PTL-like [Populus euphratica]
11 Hb_003427_070 0.1185452512 - - hypothetical protein POPTR_0067s00310g [Populus trichocarpa]
12 Hb_000739_190 0.1189524271 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
13 Hb_003023_030 0.1199624118 - - PREDICTED: MATE efflux family protein 5-like isoform X1 [Citrus sinensis]
14 Hb_001856_130 0.1226301031 - - hypothetical protein CISIN_1g022795mg [Citrus sinensis]
15 Hb_000646_040 0.123373068 - - PREDICTED: thiamine-repressible mitochondrial transport protein THI74-like [Jatropha curcas]
16 Hb_128216_010 0.1237993079 - - PREDICTED: UDP-glycosyltransferase 79B6-like [Jatropha curcas]
17 Hb_001110_060 0.1292569786 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
18 Hb_000120_600 0.1304290246 - - PREDICTED: uncharacterized protein LOC105628582 [Jatropha curcas]
19 Hb_001022_070 0.1308390392 - - cell wall invertase [Manihot esculenta]
20 Hb_005111_020 0.1308803624 - - hypothetical protein CISIN_1g0417821mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_000139_390 Hb_000139_390 Hb_004112_070 Hb_004112_070 Hb_000139_390--Hb_004112_070 Hb_004474_070 Hb_004474_070 Hb_000139_390--Hb_004474_070 Hb_001953_010 Hb_001953_010 Hb_000139_390--Hb_001953_010 Hb_000175_370 Hb_000175_370 Hb_000139_390--Hb_000175_370 Hb_000120_560 Hb_000120_560 Hb_000139_390--Hb_000120_560 Hb_000684_110 Hb_000684_110 Hb_000139_390--Hb_000684_110 Hb_000000_320 Hb_000000_320 Hb_004112_070--Hb_000000_320 Hb_005111_020 Hb_005111_020 Hb_004112_070--Hb_005111_020 Hb_004112_070--Hb_000684_110 Hb_001110_060 Hb_001110_060 Hb_004112_070--Hb_001110_060 Hb_001022_070 Hb_001022_070 Hb_004112_070--Hb_001022_070 Hb_002303_050 Hb_002303_050 Hb_004474_070--Hb_002303_050 Hb_004474_070--Hb_001953_010 Hb_128216_010 Hb_128216_010 Hb_004474_070--Hb_128216_010 Hb_001675_350 Hb_001675_350 Hb_004474_070--Hb_001675_350 Hb_002804_070 Hb_002804_070 Hb_004474_070--Hb_002804_070 Hb_001953_010--Hb_000000_320 Hb_001953_010--Hb_002804_070 Hb_001953_010--Hb_002303_050 Hb_001953_010--Hb_001022_070 Hb_001953_010--Hb_128216_010 Hb_002186_170 Hb_002186_170 Hb_000175_370--Hb_002186_170 Hb_000175_370--Hb_000120_560 Hb_001500_020 Hb_001500_020 Hb_000175_370--Hb_001500_020 Hb_006351_050 Hb_006351_050 Hb_000175_370--Hb_006351_050 Hb_000172_450 Hb_000172_450 Hb_000175_370--Hb_000172_450 Hb_000646_040 Hb_000646_040 Hb_000120_560--Hb_000646_040 Hb_000614_120 Hb_000614_120 Hb_000120_560--Hb_000614_120 Hb_003023_030 Hb_003023_030 Hb_000120_560--Hb_003023_030 Hb_000120_560--Hb_002186_170 Hb_084812_010 Hb_084812_010 Hb_000684_110--Hb_084812_010 Hb_000739_190 Hb_000739_190 Hb_000684_110--Hb_000739_190 Hb_000684_110--Hb_001110_060 Hb_003427_070 Hb_003427_070 Hb_000684_110--Hb_003427_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.16545 2.11968 8.36799 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.930168

CAGE analysis