Hb_004112_070

Information

Type -
Description -
Location Contig4112: 45426-47759
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40696: 45250-46320
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004112_070 0.0 - - -
2 Hb_000139_390 0.0755327441 - - -
3 Hb_000000_320 0.0756911175 - - PREDICTED: calcium uniporter protein 4, mitochondrial [Jatropha curcas]
4 Hb_005111_020 0.0904247178 - - hypothetical protein CISIN_1g0417821mg, partial [Citrus sinensis]
5 Hb_000684_110 0.091462797 - - hypothetical protein POPTR_0006s13250g [Populus trichocarpa]
6 Hb_001110_060 0.0916265619 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
7 Hb_001022_070 0.0924322899 - - cell wall invertase [Manihot esculenta]
8 Hb_001953_010 0.0958129867 - - PREDICTED: bidirectional sugar transporter SWEET10-like [Jatropha curcas]
9 Hb_084812_010 0.0963191397 - - PREDICTED: putative RING-H2 finger protein ATL21B [Vitis vinifera]
10 Hb_004474_070 0.0977504183 desease resistance Gene Name: NB-ARC Disease resistance protein RPP8, putative [Ricinus communis]
11 Hb_003032_110 0.1015837888 - - -
12 Hb_003023_030 0.1026583372 - - PREDICTED: MATE efflux family protein 5-like isoform X1 [Citrus sinensis]
13 Hb_001408_080 0.1089206819 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Jatropha curcas]
14 Hb_009070_010 0.1089962096 - - Spermidine synthase, putative [Ricinus communis]
15 Hb_000120_560 0.117219434 - - protein with unknown function [Ricinus communis]
16 Hb_103225_030 0.1204739161 transcription factor TF Family: Orphans DNA binding protein, putative [Ricinus communis]
17 Hb_001427_100 0.1212952492 - - acc synthase, putative [Ricinus communis]
18 Hb_002303_050 0.1213810986 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor PTL-like [Populus euphratica]
19 Hb_000020_210 0.1226232388 - - hypothetical protein JCGZ_17348 [Jatropha curcas]
20 Hb_000739_190 0.1241686572 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_004112_070 Hb_004112_070 Hb_000139_390 Hb_000139_390 Hb_004112_070--Hb_000139_390 Hb_000000_320 Hb_000000_320 Hb_004112_070--Hb_000000_320 Hb_005111_020 Hb_005111_020 Hb_004112_070--Hb_005111_020 Hb_000684_110 Hb_000684_110 Hb_004112_070--Hb_000684_110 Hb_001110_060 Hb_001110_060 Hb_004112_070--Hb_001110_060 Hb_001022_070 Hb_001022_070 Hb_004112_070--Hb_001022_070 Hb_004474_070 Hb_004474_070 Hb_000139_390--Hb_004474_070 Hb_001953_010 Hb_001953_010 Hb_000139_390--Hb_001953_010 Hb_000175_370 Hb_000175_370 Hb_000139_390--Hb_000175_370 Hb_000120_560 Hb_000120_560 Hb_000139_390--Hb_000120_560 Hb_000139_390--Hb_000684_110 Hb_000000_320--Hb_001953_010 Hb_000000_320--Hb_005111_020 Hb_000000_320--Hb_001022_070 Hb_003427_020 Hb_003427_020 Hb_000000_320--Hb_003427_020 Hb_000000_320--Hb_004474_070 Hb_005111_020--Hb_001110_060 Hb_000020_210 Hb_000020_210 Hb_005111_020--Hb_000020_210 Hb_001408_080 Hb_001408_080 Hb_005111_020--Hb_001408_080 Hb_001427_100 Hb_001427_100 Hb_005111_020--Hb_001427_100 Hb_122951_010 Hb_122951_010 Hb_005111_020--Hb_122951_010 Hb_084812_010 Hb_084812_010 Hb_000684_110--Hb_084812_010 Hb_000739_190 Hb_000739_190 Hb_000684_110--Hb_000739_190 Hb_000684_110--Hb_001110_060 Hb_003427_070 Hb_003427_070 Hb_000684_110--Hb_003427_070 Hb_001110_060--Hb_001408_080 Hb_003032_110 Hb_003032_110 Hb_001110_060--Hb_003032_110 Hb_001110_060--Hb_001427_100 Hb_036520_030 Hb_036520_030 Hb_001110_060--Hb_036520_030 Hb_000085_410 Hb_000085_410 Hb_001110_060--Hb_000085_410 Hb_001022_070--Hb_001953_010 Hb_001022_070--Hb_003427_020 Hb_001022_070--Hb_004474_070 Hb_002303_050 Hb_002303_050 Hb_001022_070--Hb_002303_050 Hb_005946_200 Hb_005946_200 Hb_001022_070--Hb_005946_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.469718 0.588521 1.70363 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.331512

CAGE analysis