Hb_003032_110

Information

Type -
Description -
Location Contig3032: 142918-143124
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32010: 142803-143404
cDNA
(Sanger)
(ID:Location)		 012_I19.ab1: 142803-143335 , 023_H24.ab1: 142803-143331 , 028_M18.ab1: 142803-143302 , 034_M13.ab1: 142803-143302 , 036_F02.ab1: 142803-143329 , 037_N19.ab1: 142803-143404 , 037_O15.ab1: 142803-143302 , 052_D01.ab1: 142803-143331

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003032_110 0.0 - - -
2 Hb_036520_030 0.086637864 - - PREDICTED: uncharacterized protein LOC105638098 [Jatropha curcas]
3 Hb_001110_060 0.0878158765 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
4 Hb_005741_030 0.0892130368 - - PREDICTED: PI-PLC X domain-containing protein At5g67130-like [Jatropha curcas]
5 Hb_000724_060 0.0937656353 transcription factor TF Family: MIKC PREDICTED: truncated transcription factor CAULIFLOWER A-like [Jatropha curcas]
6 Hb_001408_080 0.094149808 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Jatropha curcas]
7 Hb_001136_040 0.0946771321 - - amino acid transporter, putative [Ricinus communis]
8 Hb_004785_220 0.0993416067 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.2 [Populus euphratica]
9 Hb_115572_010 0.1013499172 - - PREDICTED: beta-galactosidase 6 [Jatropha curcas]
10 Hb_004112_070 0.1015837888 - - -
11 Hb_103225_030 0.1018477231 transcription factor TF Family: Orphans DNA binding protein, putative [Ricinus communis]
12 Hb_004607_060 0.1046516411 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein WIP2 [Jatropha curcas]
13 Hb_011381_050 0.1078238835 - - PREDICTED: protein GLUTAMINE DUMPER 5-like [Jatropha curcas]
14 Hb_001427_100 0.1118299228 - - acc synthase, putative [Ricinus communis]
15 Hb_007185_050 0.1136974326 - - hypothetical protein JCGZ_22475 [Jatropha curcas]
16 Hb_000680_060 0.1172110529 - - hypothetical protein POPTR_0001s20790g [Populus trichocarpa]
17 Hb_009079_020 0.1172488214 - - PREDICTED: protein WALLS ARE THIN 1 [Jatropha curcas]
18 Hb_084812_010 0.1172597345 - - PREDICTED: putative RING-H2 finger protein ATL21B [Vitis vinifera]
19 Hb_005127_050 0.1193654708 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA2-like [Populus euphratica]
20 Hb_003023_030 0.1195237528 - - PREDICTED: MATE efflux family protein 5-like isoform X1 [Citrus sinensis]

Gene co-expression network

sample Hb_003032_110 Hb_003032_110 Hb_036520_030 Hb_036520_030 Hb_003032_110--Hb_036520_030 Hb_001110_060 Hb_001110_060 Hb_003032_110--Hb_001110_060 Hb_005741_030 Hb_005741_030 Hb_003032_110--Hb_005741_030 Hb_000724_060 Hb_000724_060 Hb_003032_110--Hb_000724_060 Hb_001408_080 Hb_001408_080 Hb_003032_110--Hb_001408_080 Hb_001136_040 Hb_001136_040 Hb_003032_110--Hb_001136_040 Hb_004032_290 Hb_004032_290 Hb_036520_030--Hb_004032_290 Hb_036520_030--Hb_001408_080 Hb_001427_100 Hb_001427_100 Hb_036520_030--Hb_001427_100 Hb_002874_200 Hb_002874_200 Hb_036520_030--Hb_002874_200 Hb_003466_010 Hb_003466_010 Hb_036520_030--Hb_003466_010 Hb_010164_030 Hb_010164_030 Hb_036520_030--Hb_010164_030 Hb_001110_060--Hb_001408_080 Hb_005111_020 Hb_005111_020 Hb_001110_060--Hb_005111_020 Hb_001110_060--Hb_001427_100 Hb_001110_060--Hb_036520_030 Hb_000085_410 Hb_000085_410 Hb_001110_060--Hb_000085_410 Hb_103225_030 Hb_103225_030 Hb_005741_030--Hb_103225_030 Hb_005741_030--Hb_001408_080 Hb_005741_030--Hb_001427_100 Hb_005741_030--Hb_036520_030 Hb_001541_210 Hb_001541_210 Hb_005741_030--Hb_001541_210 Hb_039946_060 Hb_039946_060 Hb_005741_030--Hb_039946_060 Hb_009079_020 Hb_009079_020 Hb_000724_060--Hb_009079_020 Hb_015175_070 Hb_015175_070 Hb_000724_060--Hb_015175_070 Hb_004607_060 Hb_004607_060 Hb_000724_060--Hb_004607_060 Hb_002092_060 Hb_002092_060 Hb_000724_060--Hb_002092_060 Hb_005127_050 Hb_005127_050 Hb_000724_060--Hb_005127_050 Hb_007122_020 Hb_007122_020 Hb_000724_060--Hb_007122_020 Hb_000849_030 Hb_000849_030 Hb_001408_080--Hb_000849_030 Hb_001408_080--Hb_001427_100 Hb_001408_080--Hb_005111_020 Hb_012132_050 Hb_012132_050 Hb_001408_080--Hb_012132_050 Hb_007185_050 Hb_007185_050 Hb_001136_040--Hb_007185_050 Hb_001136_160 Hb_001136_160 Hb_001136_040--Hb_001136_160 Hb_009783_010 Hb_009783_010 Hb_001136_040--Hb_009783_010 Hb_001898_040 Hb_001898_040 Hb_001136_040--Hb_001898_040 Hb_011853_020 Hb_011853_020 Hb_001136_040--Hb_011853_020 Hb_000009_280 Hb_000009_280 Hb_001136_040--Hb_000009_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 19.9543 31.1845 114.803 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 33.7408

CAGE analysis