Hb_000849_030

Information

Type -
Description -
Location Contig849: 40937-47017
Sequence    

Annotation

kegg
ID rcu:RCOM_1626860
description fimbrin, putative
nr
ID XP_012084895.1
description PREDICTED: fimbrin-2 [Jatropha curcas]
swissprot
ID O50064
description Fimbrin-2 OS=Arabidopsis thaliana GN=FIM2 PE=2 SV=1
trembl
ID A0A067LA47
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15112 PE=4 SV=1
Gene Ontology
ID GO:0005515
description fimbrin-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60282: 41027-47005 , PASA_asmbl_60283: 45681-46071
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000849_030 0.0 - - PREDICTED: fimbrin-2 [Jatropha curcas]
2 Hb_001408_080 0.0691705626 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Jatropha curcas]
3 Hb_003466_010 0.0883751543 - - PREDICTED: protein NRT1/ PTR FAMILY 2.11-like [Jatropha curcas]
4 Hb_036520_030 0.0885004266 - - PREDICTED: uncharacterized protein LOC105638098 [Jatropha curcas]
5 Hb_122951_010 0.0908830205 - - PREDICTED: uncharacterized protein LOC105639235 [Jatropha curcas]
6 Hb_001427_100 0.0920222155 - - acc synthase, putative [Ricinus communis]
7 Hb_103225_030 0.0948749127 transcription factor TF Family: Orphans DNA binding protein, putative [Ricinus communis]
8 Hb_000020_200 0.0951874417 - - hypothetical protein EUGRSUZ_B00411 [Eucalyptus grandis]
9 Hb_005111_020 0.0956658246 - - hypothetical protein CISIN_1g0417821mg, partial [Citrus sinensis]
10 Hb_001110_060 0.0959989018 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
11 Hb_005741_030 0.0968941905 - - PREDICTED: PI-PLC X domain-containing protein At5g67130-like [Jatropha curcas]
12 Hb_012132_050 0.1009170518 - - PREDICTED: aspartic proteinase PCS1 [Jatropha curcas]
13 Hb_000020_210 0.1013533169 - - hypothetical protein JCGZ_17348 [Jatropha curcas]
14 Hb_002053_190 0.102801695 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105639296 isoform X1 [Jatropha curcas]
15 Hb_039946_060 0.1028534754 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor TINY-like [Jatropha curcas]
16 Hb_001369_190 0.1054608919 - - PREDICTED: leucine-rich repeat receptor-like protein kinase TDR [Jatropha curcas]
17 Hb_009785_030 0.1055833443 transcription factor TF Family: NAC PREDICTED: NAC transcription factor ONAC010 [Jatropha curcas]
18 Hb_002388_070 0.1056924373 - - ring finger protein, putative [Ricinus communis]
19 Hb_000012_350 0.1061551325 transcription factor TF Family: HB PREDICTED: homeobox protein ATH1 [Jatropha curcas]
20 Hb_000395_310 0.1064133288 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000849_030 Hb_000849_030 Hb_001408_080 Hb_001408_080 Hb_000849_030--Hb_001408_080 Hb_003466_010 Hb_003466_010 Hb_000849_030--Hb_003466_010 Hb_036520_030 Hb_036520_030 Hb_000849_030--Hb_036520_030 Hb_122951_010 Hb_122951_010 Hb_000849_030--Hb_122951_010 Hb_001427_100 Hb_001427_100 Hb_000849_030--Hb_001427_100 Hb_103225_030 Hb_103225_030 Hb_000849_030--Hb_103225_030 Hb_001110_060 Hb_001110_060 Hb_001408_080--Hb_001110_060 Hb_001408_080--Hb_001427_100 Hb_005111_020 Hb_005111_020 Hb_001408_080--Hb_005111_020 Hb_012132_050 Hb_012132_050 Hb_001408_080--Hb_012132_050 Hb_001408_080--Hb_036520_030 Hb_005648_020 Hb_005648_020 Hb_003466_010--Hb_005648_020 Hb_000093_010 Hb_000093_010 Hb_003466_010--Hb_000093_010 Hb_000866_130 Hb_000866_130 Hb_003466_010--Hb_000866_130 Hb_003466_010--Hb_036520_030 Hb_003466_010--Hb_012132_050 Hb_008021_050 Hb_008021_050 Hb_003466_010--Hb_008021_050 Hb_004032_290 Hb_004032_290 Hb_036520_030--Hb_004032_290 Hb_036520_030--Hb_001427_100 Hb_002874_200 Hb_002874_200 Hb_036520_030--Hb_002874_200 Hb_010164_030 Hb_010164_030 Hb_036520_030--Hb_010164_030 Hb_043630_030 Hb_043630_030 Hb_122951_010--Hb_043630_030 Hb_017862_030 Hb_017862_030 Hb_122951_010--Hb_017862_030 Hb_002522_040 Hb_002522_040 Hb_122951_010--Hb_002522_040 Hb_122951_010--Hb_005111_020 Hb_000020_210 Hb_000020_210 Hb_122951_010--Hb_000020_210 Hb_039946_060 Hb_039946_060 Hb_001427_100--Hb_039946_060 Hb_001427_100--Hb_005111_020 Hb_001427_100--Hb_010164_030 Hb_001427_100--Hb_000020_210 Hb_000012_350 Hb_000012_350 Hb_001427_100--Hb_000012_350 Hb_005741_030 Hb_005741_030 Hb_103225_030--Hb_005741_030 Hb_003023_030 Hb_003023_030 Hb_103225_030--Hb_003023_030 Hb_103225_030--Hb_001408_080 Hb_002534_070 Hb_002534_070 Hb_103225_030--Hb_002534_070 Hb_002762_100 Hb_002762_100 Hb_103225_030--Hb_002762_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.21836 8.17897 11.3561 36.6704 0.112648 0.0715277
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.15874 0 0.0264593 1.6589 11.3289

CAGE analysis